Salvia hispanica (chia): 125215101
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Entry
125215101 CDS
T09851
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
shis03015
mRNA surveillance pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125215101
09122 Translation
03013 Nucleocytoplasmic transport
125215101
03015 mRNA surveillance pathway
125215101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125215101
03041 Spliceosome [BR:
shis03041
]
125215101
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125215101
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125215101
Spliceosome [BR:
shis03041
]
Complex C
Other components
EJC/TREX
125215101
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125215101
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
125215101
NCBI-ProteinID:
XP_047972369
LinkDB
All DBs
Position
3:1546136..1549885
Genome browser
AA seq
428 aa
AA seq
DB search
MGETKETEAYEEELLDYEEEEEKAPDSVGAKLNGETVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIRVHKDLLKNECPHIVVGTPGRILA
LARDKELSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVT
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagacgaaggagaccgaagcctacgaggaggagcttctcgactacgaggaagaa
gaggagaaagcacctgattccgtcggtgccaagctcaacggcgagaccgtgaagaaggga
tatgtggggatccacagttcaggattcagggacttcctcttgaaaccggagcttttacgt
gctattgttgactcaggatttgaacatccgtccgaagttcaacatgagtgtattcctcaa
gctattctgggaatggatgtcatctgccaagccaaatctggtatggggaaaactgctgta
tttgttctttcaacattacagcagattgaaccagttgcaggccaagttgctgcacttgtc
ctgtgtcatacgagggaattagcttaccagatttgtcatgagttcgagagattcagcaca
tatttaccggatatcaaggtagctgttttctatggtggtgtgaacatcagagtgcacaag
gatcttctgaagaatgaatgtcctcacattgttgttggaactccgggaaggatacttgct
ctggctagagacaaggaactttctctgagaaatgtgaggcatttcatactggatgagtgt
gacaagatgctcgagtctcttgatatgcggagggatgtgcaggagatcttcaagatgacc
cctcatgacaagcaagttatgatgttttcagctactctcagcaaggagattcgacctgtt
tgcaagaaattcatgcaagatccaatggaaatatatgtggatgatgaagccaagttgacc
cttcatggtcttgttcagcactacatcaaattgagtgagctagagaaaaaccggaagtta
aatgatctgctcgatgccttggatttcaatcaagtggtcatctttgtcaaaagtgtcacc
cgagctgcggagctaaataagttgctcgtggagtgcaacttcccatctatatgcattcac
tctggcatgtcccaggaagaaagattaactcggtacaagagtttcaaagaaggccataag
aggattttggtagctacagatttagttggcagaggaatcgacattgagcgagttaacatt
gtgatcaactatgatatgccggattccgcagacacttatctgcacagggttggtagagct
gggaggtttggcaccaaagggctggccataacatttgttgcatctgcatctgattcagat
gttctcaatcaagttcaggagaggtttgaagttgatattaaggagcttcctgagcaaatc
gatacatcgacatacatgccatcctaa
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