Salvia hispanica (chia): 125215256
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Entry
125215256 CDS
T09851
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125215256
03036 Chromosome and associated proteins [BR:
shis03036
]
125215256
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
125215256
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
125215256
SLIK complex
125215256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_CHD1_Hrp3
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
OAM_alpha
SWI2_SNF2
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
125215256
NCBI-ProteinID:
XP_047972578
LinkDB
All DBs
Position
3:complement(5219133..5233477)
Genome browser
AA seq
1685 aa
AA seq
DB search
MAFSRNSSDEAVDQIALNERSHLHQLDIDSSRLKDNAMTNNEEMTDLTPDKNGGEDTRSN
LRVGHDQPPARGSAVGGKWGSSFWKDYPPARTSHGPSESGEESKSGSEYKGSEVEEESDG
LEDRMESEYDDITHKDLTGKGHQTVPVDEMLSDEYYEQDGDDPPTEAVNHYRTANHSLGY
SSKPTSRPAPSNISRKLKGSKANKYSDEDADYEEDDDDEDEDDPDDADFNPDYGARSREN
QIKDEDEGWDAEESDEDDNIDDEDDLDVSDEDDPYFKKSRAKQPSKSGRNLKSTREFKSI
ASSTRRKKGRASFEDDDEDSSADDSENISDEDFRSSRRGAQAHRKNGGRSVAVNDSSRRN
EPRTSGRSVRKISYVESDGSEDIDDIKKKNQKKEEEEDADAIEKVLWHQRRGTAEEALRN
NKSTDPVLLSYLFDSELDWNDMEFLIKWKGQSHLHCQWKSFSELQNLSGFKKVLNYTKKV
MEDVKYRRMVSREEIEVNDVSKEMDLDIIKQNSQVERVIAERVVKDGSGEVVSEYLVKWQ
GLSYAEATWEKDIDISFAQDAIDEYKSREAASMVQGKTVDFQRKKIKGSLRKLDEQPEWL
KGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNSQQIQGPFLVV
VPLSTLSNWAKEFRKWLPEMNVIIYVGTRASREVCQQYEFYNDKRAGRSTNFDTLLTTYE
VLLKDKAVLSKIRWSYLMVDEAHRLKNSEASLYMALSEFSTKNKLLITGTPLQNSVEELW
ALLHFLDRDKFRSKDDFVQKYKNLSSFNETELTNLHMELRPHILRRVIKDVEKSLPPKIE
RILRVEMSPLQKQYYKWILERNFQDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHG
YGGDTNSLGSTKLERVILSSGKLVILDKLLNRLHETNHRVLIFSQMVRMLDILAEYLSLK
GFQYQRLDGSTKAELRHQAMEHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWN
PQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLE
KKETKKGTTFDKNELSAILRFGAEELFKEEKNDEESKKRLLGMDIDEILERAEKVENKAT
EGEEGHELLSAFKVANFGSTEDDGTFWSRMIKPEAVAQAEDALAPRAARNIKSYAEAIPS
EKTNKRKKKGVETQERMSKRRRADSAYSPPVLEGATAQVRGWSYGNLPKRDATRFFRAVK
KFGNDSQISSIAAEVGGTVEAASTEAQIELYDALIDGCREAIKGEIMDPKGPLLDFFGVP
VKADEILERVEELQSLAKRINRYEDPLSQFRALAYLKPSTWSKGCGWNQKDDARLLLGVY
YHGFGNWEKIRLDASLGLTKKIAPVELQHHETFLPRAPQLKERAAQLLEMEVAAVGGKNS
NVKVGRKNAKKQKDALTISGGKGRQGKPTSPRGNIQMNRRRAPKSQKMEPLVKEEGEMSD
NEEVYEQFKEVKWREWCEDVMVDEEKTLKRLQKLQSISADLPKDKVLSKIRNYLQLIGRR
VDQIVAEYEQELYRQERMTTRLWNYVSTFSNLSGERLQQIYTKLKQEQGVGPSATGHRDL
DVEKFEAWKRKKRAEADPSHIQYPYQRPPPNNGTWLPDPSSSGILGPPPSESGRQLRNGR
PYRMQ
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttccagaaattcttcagatgaagcagtggaccagattgcattgaatgagaga
agtcatttgcaccagctggacattgatagcagtaggcttaaggacaatgctatgaccaat
aatgaagaaatgacagatcttacacctgataaaaatgggggtgaagatactagaagtaat
ctaagggtaggacatgaccagcctcctgctaggggatcggctgtggggggtaagtggggt
tcatctttttggaaggactacccaccggcgaggacatcccatgggccatcagagtcaggg
gaggagtcaaagagtgggtcagagtataaaggctctgaagttgaggaggagtctgatgga
ttagaggatagaatggagtcagaatatgatgacattacacataaagatttgacggggaaa
gggcatcagactgttccggttgatgagatgttgtctgatgagtactatgagcaagatggt
gatgatccaccaaccgaggctgtgaaccattataggacagcaaaccactcacttgggtat
agttcgaagccaacatctcggcctgctcccagcaatatttcgaggaaattgaaggggtcg
aaagccaacaaatacagtgatgaagatgcagattatgaagaagatgacgacgacgaagat
gaagacgaccctgatgatgctgacttcaatcctgattatggggcaagaagcagggagaat
cagatcaaggatgaagatgaaggttgggatgctgaagaatctgatgaggatgataatatt
gatgatgaggatgatttggatgtctcggatgaagatgatccatactttaagaaaagtagg
gcaaaacaaccaagtaaaagtggtcgtaatttgaagtctacccgagaatttaagtcaatt
gcatcatccactcggagaaagaaaggtagagcttcatttgaggatgatgacgaagattct
tctgctgatgactcagaaaatatcagtgatgaagattttagaagttcaaggagaggtgca
caagcgcatagaaagaatggtggtcgatctgttgctgttaatgattctagtaggagaaat
gaaccgcgaacatcaggtcgttcagttcgtaaaatatcatatgttgagagtgatggaagt
gaagatattgatgacataaagaaaaagaatcaaaagaaggaggaagaagaagatgccgat
gcgattgagaaggtattatggcatcaacgaaggggcacagctgaagaagcactgaggaat
aataaatcaacagacccagttcttttgagctatttgtttgattctgaactggattggaat
gatatggaatttctgataaagtggaaaggccaatcacatttacattgtcaatggaaatca
ttttctgagttgcagaatctcagtggttttaagaaggttttgaattataccaaaaaagta
atggaagatgtgaagtaccggaggatggtatcccgggaggagattgaagtaaatgatgtc
agcaaggagatggacctggatatcatcaaacaaaacagtcaggtggagagagtaatagcg
gagcgagttgttaaagatggttcaggtgaagtagtttcagaatatttggtcaagtggcag
ggactgtcttatgctgaagctacttgggaaaaggacatagatatttcatttgctcaagat
gctatcgatgagtacaagtctcgagaggctgcatcaatggttcaagggaagactgttgat
tttcagcgcaagaaaatcaaaggaagtctcaggaagcttgatgagcagcctgagtggctg
aaaggtggcaaacttcgagactatcagcttgaaggcctgaactttctagtgaacagctgg
agaaatgataccaatgtaattttagcagatgaaatgggtcttggtaaaactgttcagtca
gtttcgatgcttggttttctgcagaattcgcagcaaattcaaggaccatttcttgtagtt
gttcctctatctaccttgtctaattgggcaaaagagtttagaaagtggttgcctgagatg
aatgttattatatatgttggaactcgtgctagccgtgaggtttgccagcaatatgagttt
tacaatgacaaaagagcaggcaggagtactaattttgatactcttttgactacatacgaa
gtattattgaaggataaagccgttctctcaaaaattaggtggagctacctgatggttgat
gaagcacataggttaaaaaacagcgaggcctctttatatatggcattatcagaatttagc
acaaagaacaagttgctaattaccggcactcccctgcaaaacagtgttgaagagctatgg
gctttgcttcattttctcgatcgtgataagtttaggagcaaagatgactttgttcaaaag
tacaagaatcttagttccttcaatgaaacagagcttacgaatcttcacatggaattgaga
cctcacattctccgaagagtgattaaagatgtggagaagtctttacctcccaagattgaa
cgcatcctgagggttgagatgtctccacttcagaaacagtattataagtggattttggaa
cgtaacttccaagatttgaataaaggagttcggggaaatcaggtctcacttttgaatatt
gtggtggagttgaagaaatgctgtaaccacccatttttgtttgagagtgctgaccatggt
tatggcggggatacaaactccctaggtagcacaaaactcgaacgtgttattttgagtagc
ggaaagctggttatactggataaactgcttaatagattgcatgagaccaaccatcgtgtt
cttatattttctcagatggttaggatgttggatatacttgccgagtatctttctctcaaa
gggttccaataccaaagacttgatggcagtacaaaggctgagttacgtcatcaggctatg
gaacattttaatgccccggggagcgaggacttctgttttcttctttcaactcgtgctggt
gggttgggtatcaatcttgcaactgcagacacggttatcatatttgattccgactggaat
ccgcaaaatgacttacaggcgatgagccgagctcatcgaattgggcagcaagaagtagtt
aacatttaccggtttgttactagcaagagtgtagaggaagatatattggagcgtgctaaa
aagaaaatggttctggaccatttggttattcaaaaactgaatgcagagggcaaactggag
aaaaaagaaacgaaaaaaggaacaacctttgataaaaatgagctttcagcaattctgagg
tttggggctgaagaactctttaaggaagaaaagaatgatgaggaaagcaagaaaaggctt
cttggtatggatattgatgagattcttgaaagggcagagaaggttgaaaacaaagcaacc
gaaggagaggaaggtcatgaactgttgagtgcatttaaggttgcaaatttcggcagtact
gaagatgatggaactttctggagccggatgataaagccagaagctgttgcacaagctgaa
gatgctttagctcctcgagcagcacgaaatattaaaagttatgcagaggctataccatct
gaaaagactaataagcggaaaaagaaaggagttgaaactcaggaaagaatgtcaaagaga
cgaagggcagattctgcttactctcctcctgtacttgaaggtgctactgcacaagtgaga
ggatggtcatatggaaatttacctaaaagagatgcaactcgcttttttcgcgcggtcaag
aagtttggaaatgatagtcagataagctcgatagctgcagaagttggtggaacggttgaa
gctgcttcaactgaagctcaaattgagctatatgatgctttaattgatggttgtagagaa
gcaattaaaggagagattatggaccccaagggtccactcttagatttcttcggtgtacct
gtgaaggctgatgaaatcttagagcgcgttgaagaacttcagtctctcgccaagcggatc
aaccggtatgaagatcctctgtcgcaattcagagcactagcatatctcaaaccatccaca
tggtccaaaggttgtggctggaaccagaaggatgatgcaaggctgctgcttggagtttac
tatcatggttttggaaattgggaaaagataaggttggatgcaagccttggtcttacaaaa
aagattgctccagtggaacttcagcatcatgaaactttcctaccccgagccccacaactg
aaagagcgagctgcacaacttttagaaatggaagtcgcagctgttggtggaaagaactct
aatgtgaaagttggccgtaagaatgcaaaaaagcagaaagacgctcttactatatcaggt
ggaaagggaagacaagggaagcctacttctcctagagggaatattcaaatgaatagaaga
agagctcccaaatcccagaagatggagcctttagttaaagaggaaggtgaaatgtctgat
aatgaggaagtttatgagcagttcaaggaagtaaagtggagggagtggtgtgaagatgtc
atggtagatgaggaaaagactcttaaacgtctccaaaagctgcagtctattagtgcagat
ttgcctaaagataaggtgctttccaaaattcggaactatttgcagcttatcggtaggagg
gttgaccaaattgttgcagagtatgagcaggagttgtataggcaagaaagaatgaccact
agattgtggaattatgtatctacgttttcaaacttgtctggtgagagacttcagcaaatt
tatactaaacttaaacaggagcaaggtgtaggaccgtcggctactgggcacagggatctt
gatgtggagaaattcgaagcttggaaacgaaaaaaaagagctgaagccgatccttctcat
attcagtatccataccaaagacctcctccaaataatgggacctggttacccgatcccagc
tcttctgggattctagggccgccaccatctgagagcggcagacagttacgtaatgggagg
ccttaccggatgcagtaa
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integrated database retrieval system
