Salvia hispanica (chia): 125215413
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Entry
125215413 CDS
T09851
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
shis03015
mRNA surveillance pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125215413
09122 Translation
03013 Nucleocytoplasmic transport
125215413
03015 mRNA surveillance pathway
125215413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125215413
03041 Spliceosome [BR:
shis03041
]
125215413
03009 Ribosome biogenesis [BR:
shis03009
]
125215413
03012 Translation factors [BR:
shis03012
]
125215413
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125215413
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125215413
mRNA cycle factors
Stress granule specific factors
125215413
Spliceosome [BR:
shis03041
]
Complex C
Other components
EJC/TREX
125215413
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
90S particles
Helicases
125215413
Translation factors [BR:
shis03012
]
Eukaryotic type
Initiation factors
eIF-4
125215413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Helicase_RecD
PhoH
Motif
Other DBs
NCBI-GeneID:
125215413
NCBI-ProteinID:
XP_047972778
LinkDB
All DBs
Position
3:complement(50133381..50136534)
Genome browser
AA seq
410 aa
AA seq
DB search
MSAAVAQRGGGGGGRRAMEEDDAKLVFETSKGVEPIMSFDEMGIKEELLRGIYNYGFEKP
SAIQQRAVLPIISHRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELASQ
TEKVILAIGDYINVQAHACVGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRAI
KILILDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPNEILEITSKFMTDPVRILV
KRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTAKMRENN
FTVSSMHGDMPQKERDAIMGEFRSGQTRVLITTDVWARGLDVQQVSLVINYDLPNNRELY
IHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgcggtggctcaaagaggcggcggcggcggggggcggcgtgcgatggaggaa
gacgatgcgaagctcgtgttcgagacctccaaaggtgtggagccaatcatgagcttcgac
gagatgggaataaaggaggagctcctccgcggaatctacaattacggcttcgagaagccc
tccgctatccaacagcgcgcggtccttccgattatctcccaccgtgacgtcattgctcag
gcgcaatccggtactggaaagacttcaatgattgctctaactgtttgccagattgtcgat
accaaatcatcggaggtgcaagcattgattttatctcccactagagagttggcttctcaa
acagagaaagtgatactggcaattggggactatataaatgtgcaagctcatgcttgtgtt
ggaggcaaaagtgtgggtgaggatataagaaaactagagcatggggttcaggtggtgtca
ggtactcctggcagagtttgtgacatgatcaaaagaagaactttgcgaactagagcaatt
aaaatattgattctggacgagtctgatgaaatgttgagcagaggatttaaggatcagatt
tatgatgtctacagatatcttcctcctgacctgcaggttgtcttaatctctgccaccctc
ccaaatgaaatattggagattacaagtaaatttatgactgatccagtccgcatcctagta
aagcgtgatgaattgactctggagggtatcaagcaattcttcgttgcagttgaaagagaa
gaatggaaatttgatacgctatgtgatttatatgatacacttaccataacccaggcagtt
atattttgcaacacaaagcgcaaggttgattggctgacagcgaaaatgcgtgagaataac
tttacggtctcatccatgcatggagatatgcctcaaaaggagcgcgatgcgattatgggt
gaattccgatctggccagactcgtgtacttatcacaacagatgtttgggctaggggattg
gatgttcaacaggtttccctggtgataaattatgatcttccaaacaatcgagagctctac
atccataggattggacgatccggtcgttttgggcgaaagggtgttgccataaacttcgtt
aaaagcgatgacatcaagatccttagagatattgagcaatattacagtacacagatcgat
gaaatgcctatgaacgtcgctgatttgatttaa
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