Salvia hispanica (chia): 125215808
Help
Entry
125215808 CDS
T09851
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03020
RNA polymerase
shis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125215808
09124 Replication and repair
03420 Nucleotide excision repair
125215808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125215808
03400 DNA repair and recombination proteins [BR:
shis03400
]
125215808
Enzymes [BR:
shis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125215808
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125215808
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125215808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
125215808
NCBI-ProteinID:
XP_047973325
LinkDB
All DBs
Position
3:complement(18872821..18879639)
Genome browser
AA seq
1204 aa
AA seq
DB search
MYMDDEYEHGDNGKEHGYNNGEVYDDGEEDITQEDAWAVISAYFEDKGLVRQQLDSFDEF
INNTMQEIVDESADIEIRPESQHNPGHQPDFAETIYKISFGQIYLSKPMMTESDGETATL
FPKAARLRNLTYSAPLYVDVTKKVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLY
QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS
MAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDIL
EHICYNFQDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQK
EMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR
MLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGV
SQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNL
ALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRNPDMLVST
LRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDILALQQRS
QESPDDGGWHDLVSKGFIEYIDTEEEETTMISMTIHDLVQARERPQEAYSDTYTHCEIHP
SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT
TRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKK
MGTLVKEDFGRPDRTNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAPDDAQG
QAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK
GTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF
TDVTVDNISKALHKCGYQMRGYETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDDKIHSRG
RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCG
LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDIKQNKDLK
KKGG
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgtacatggatgatgagtacgagcatggagacaacggcaaggagcatggctacaacaat
ggcgaggtctacgacgacggcgaggaggatatcacgcaggaggatgcctgggcggtgatc
agcgcttactttgaggacaaaggtctggtgcggcagcagctcgactcattcgatgagttc
atcaataacacgatgcaggagattgtcgacgagtcggccgatatcgagatccgtcctgag
tcgcagcacaatcctggacaccagccggactttgctgagactatatacaagatcagtttt
ggtcagatttacctcagtaaaccgatgatgacggaatctgatggagaaacagctaccttg
tttcccaaggctgcaaggcttaggaatttgacgtattcagccccattgtatgttgatgtg
accaagaaagtcataaagaaaggtcatgatggggaggaagttactgagactcaggatttc
acaaaagtctttattgggaaggttcctataatgctgaggtcaagttattgcacattatat
cagaattctgagaaagatttgacagaacttggggagtgcccatatgaccaaggtggttat
ttcatcatcaacggcagtgaaaaggtgttgattgctcaggagaagatgagcactaatcac
gtctatgtatttaaaaagaggcaaccaaacaagtatgcctatgtggctgaagttaggtcc
atggcggagacacaaaacaggccacccagtaccatgtttgtccgcatgctttctcgaact
agtgccaaagggggctcatctggccagtatatacgtgctaccctcccatacatacgcact
gagatccctatcattattgtgtttcgagcactaggatttgttgccgacaaagatatatta
gagcatatctgctacaattttcaagatactcaaatgatggaactgcttcggccttcctta
gaagaagcatttgttatccagaaccaacaggttgctcttgactacattgggaaaagaggg
gccactgttggtgtcaccaaagagaaaagaatcaagtatgccaaagagattcttcagaaa
gaaatgcttcctcatgttggtgttggggagtattgtgagacaaaaaaggcttattacttt
gggtatatcatccatcggcttcttttatgtgcattaggccgaagagcagaggatgataga
gaccactatggcaataaaagactagatcttgctggtcctttgttgggaggcctcttccga
atgctattcagaaagttaaccagggatgttaggtcctacgtgcagaagtgtgtagacaat
ggcaaggatgtgaatttacaatttgcaataaaggccaaaaccatcactagtggcttgaaa
tactcacttgctactggtaactggggccaagcaaatgcagctggtacaagagctggggta
tctcaggtgttaaatcgcttgacttatgcctctaccttgtcccatttgcgaaggcttaac
tctcctataggccgtgaagggaaactggccaaaccaaggcagttgcataactcccagtgg
ggaatgatgtgtcctgcagaaacacctgaaggacaggcatgtgggttggtgaagaacctt
gcattgatggtttatattacagttggctcagcagcatatccaattttggaatttttagag
gaatggggaactgagaattttgaggaaatatctcctgccgtcattcctcaagccactaag
atctttgtaaatggctgttgggttggtattcatcgcaaccctgatatgttggtgtctaca
ctaagacgcttgaggaggcgtgtcgatgtcaacacggaagttggagtggtccgagatatt
cgtttgaaagaactcaggatatacactgattatggtcgctgcagtcgtcccttatttatt
gtggaaaagcaaagacttcttataaaaaagagggatatcctggccttgcaacagagatcc
caggaatctcctgatgatggtggttggcatgacctagtctcaaagggcttcatagaatac
atagatacagaagaagaggaaacaactatgatttctatgacaatacacgatctggttcaa
gcaagggaaagaccgcaggaggcttattcagatacttatacgcactgtgaaattcatcct
tccttgatattaggcgtttgtgcttcaattattcccttcccggatcacaaccagtctcca
cgtaacacatatcagtcagctatgggtaaacaagctatgggcatttacgtcacaaactac
caatttcgaatggacaccttggcttatgtgctgtactatcctcaaaaaccactcgttaca
actcgggctatggagcacttgcattttaggcagctacctgctggcattaatgccatagtt
gccattgcatgctactccgggtacaatcaagaagattcagttatcatgaatcagtcatca
gttgaccgtggtttcttccggtctctatttttccgttcatatagagatgaagaaaagaag
atggggacattagtcaaagaggactttggacgtcctgatagaactaacaccatgggcatg
cgccacggctcctatgataagttggatgacgatgggcttgcacccccgggaaccagagtt
tctggcgaggatgtgattattggaaaaacgtctccaatagctcctgacgatgcccaaggg
caagctgctcgttacacgaaacgtgatcacagtacaagcttacggcacagtgaaaccgga
atggtggatcaagtcctgttgaccacaaatgctgatgggttgagatttgtcaaagtgagg
gtgagatcagttagaattcctcaaattggagacaaattcagtagtagacatggacagaag
ggaacagtgggcatgacttatacgcaggaggacatgccatggacgttggaaggcatcacg
cccgacataatcgtcaaccctcatgctattccatcccgtatgaccattggtcagcttatt
gagtgtatcatggggaaggtcgctgcacatatggggaaggagggagatgccactcctttc
actgatgtaaccgtggacaatatcagcaaagcccttcacaagtgtgggtatcagatgcgt
ggttatgagaccatgtacaatgggcacactggcaggcgtctttcgtctatgatattcctg
ggtcccacttactaccagaggctgaagcatatggttgatgacaagattcactctcggggt
agaggccctgttcagattctgacgaggcagcctgctgagggaaggtcgcgtgatggtggt
ctgcgttttggtgaaatggaacgagactgcatgattgcacatggagcagctcattttctc
aaggaaaggttgtttgatcaaagtgacgcatacaggatacatgtatgcgagcgatgtgga
ttaatagccatcgctaacctgaagaagaattcattcgaatgcagagggtgcaaaaacaaa
actgacatcgtacaggttcatattccatatgcttgcaagctgctattccaagaactaatg
tctatggctatagctcctagaatgctaaccaaggacattaagcaaaacaaagatctaaag
aagaagggcggttaa
DBGET
integrated database retrieval system
