Salvia hispanica (chia): 125216518
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Entry
125216518 CDS
T09851
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 6B-like
KO
K22804
structural maintenance of chromosomes protein 6
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shis03400
]
125216518
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
125216518
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
Sipho_Gp157
AAA_29
AAA_15
AAA_21
SMC_hinge
SbcC_Walker_B
Motif
Other DBs
NCBI-GeneID:
125216518
NCBI-ProteinID:
XP_047974212
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All DBs
Position
3:17373717..17389958
Genome browser
AA seq
1055 aa
AA seq
DB search
MEPSSLSRGSKRLQAGTISRIHLENFMCHSILDIDLGDFVNFITGQNGSGKSAILMALCV
AFGCRARGTHRANTLKDFIKTGCSYALVQVEMKNQGEDAFKHELYGDVIIVERKVTDSDS
GGITLRNNQGRKIGTKKEDLRELVEYFNIDVENPCTIMTQDKSREFLHSGNDKDKFKFYF
KATLLQQVDDLLNGIDKQLQDANGLISHLEDSLRPAKKELDELQEKIKNMEVMEEMSQQV
QLLRKKLAWSWVYDADRKLDAQHKLIDKLKGRIPSCQANIDQNHHKMEELNDRLATKKNE
ISNMMERTSEVRRMKVDLQQSLSMAVKEQLELTGEQERINRQIANMVKQVRSLERHIQEM
NEQYDKNTQAEESEMVERLMELQVEVEEANVNIQRSKEEEENMRQRIALVENEIQQIYYQ
IEDVEKSNRDIASRIREIQMHRRNKVTAFGGVRVTNLLQAIERNQHKFSIPPIGPIGAHV
ELEHGDLWAIAIETAVGGLLNAFIVTDHKDSRILRACAREANYNHLQIIVHDFRRQRINI
PRRMLPHTNHPTALSVLHSDNSTVLNVLIDTGNAERQVLVKDYAVGKTVAFDQRIPNLKE
VYTMDGYKMFYRESAQTIFPPKRNMRAGRLSGSFDDQIKYLEREASETKLKAQQGRGQKR
AMEEEVIDLQNTLSNVKRRRINLERQCMSKEFELRDVKKLLSSEANAADDSNLDETRQEI
SKLQDEIQEKMYLLEKVQSRVNEAGTKAKDLKMSLESLCDSAKAEIDALAEAENELMMIE
RDLQEVERVKKHYEGIMQTKVLADLKNAETEYRELENSCQENRRKASIIIPEDEIEALGC
FKESNPENLSAQLTRLTERLKRETQRFPESIDDLRMLYEKKERKISRKLHTYKASQEKME
ACEKALNLRRSKFNRNAAHLKRQLTWQFNGHLKKKGISGQINVSFEDQTLSVEVKMPHDA
SSSSVHDTSGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDAIVDF
ALAQGSQWIFITPHDISMVKNDERIKKQQMAAPRG
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggagccctcctctctctctcgcggctccaaacgcctgcaagccggtacaatctctaga
atccatctcgagaacttcatgtgtcacagcattctcgacatcgacttgggagattttgtt
aatttcatcaccggtcaaaatgggagtggaaagagcgcaattttaatggcactttgtgta
gcattcggctgccgagctcgtggtacgcacagagcgaacactcttaaggattttatcaaa
actggctgcagctatgcacttgttcaagttgagatgaaaaatcaaggtgaagatgctttt
aagcatgaattgtatggagacgtcatcattgtggagcgtaaagttacagactctgatagt
ggaggcatcacattaagaaacaatcaaggtaggaaaattggcaccaagaaagaggatctt
cgtgagcttgtagaatactttaatattgatgtagagaatccatgcacaatcatgacacaa
gacaagagtagagaatttctgcattcaggcaatgacaaagacaagttcaagttctacttc
aaggcaacacttcttcaacaagtggatgacctactaaacggtattgacaagcagctacaa
gatgcaaatggcctgattagtcatttggaagattccttaaggccggcaaagaaggaactt
gatgaattacaggaaaagataaaaaacatggaagttatggaggagatgtcacaacaggtg
cagctattaagaaagaaactagcttggtcgtgggtatatgatgctgatagaaaacttgat
gcgcaacataagttgattgacaagctaaaaggaaggatacctagctgtcaagcgaatatt
gaccagaatcatcacaagatggaagaactgaatgatcgattggcaacaaagaaaaatgaa
atatcaaatatgatggaaagaacatctgaagttagaagaatgaaggtggatctgcagcaa
agtctttctatggctgtgaaggagcagctcgagctaactggggaacaagagcgcataaat
aggcaaattgcaaatatggttaaacaggtcagatcactcgagaggcacattcaggaaatg
aatgagcagtatgacaaaaatacacaggctgaagaaagtgagatggtggaaaggcttatg
gagcttcaagttgaagttgaggaagccaatgtcaacattcagagatcgaaggaagaggag
gaaaacatgaggcaaaggatagcattggtagaaaatgaaatacagcagatttactatcag
attgaagatgtcgagaaaagcaatcgtgatattgcctcgcggatacgtgaaatccaaatg
catcgaagaaataaggttactgcatttggaggtgttcgggtaactaatctcttacaggcg
atcgagcggaatcagcataaatttagtattccacccattggtcctataggcgcccatgtg
gaattggaacatggagatctgtgggctatagctatcgaaactgcagttggtgggttgctc
aatgctttcatagtcacagatcataaagattctcgtatcttaagagcatgtgcaagggaa
gcaaactataaccacttacagattatcgtacatgattttagaagacagaggatcaacatt
ccgaggcgcatgcttccgcatactaatcatcccactgcattgtcagttctgcattcagac
aattctacagtacttaatgttttgattgatacgggtaatgctgagaggcaagtgcttgtc
aaagattatgcagttggtaaaacagttgcctttgatcaaaggataccaaacctcaaggag
gtttacacaatggatgggtacaaaatgttttaccgcgagtcagcccaaactatttttcca
ccaaaaagaaacatgagggctggccgtctctctggttcatttgatgatcagattaaatat
ctagagagagaagcatcagaaacaaaactgaaagcccaacaaggccgtggacagaaacgg
gccatggaggaagaggtgattgatcttcaaaacaccttaagcaatgtaaagagaaggcgt
atcaatctggagcggcaatgtatgtcgaaagaatttgagctgagagatgtaaagaaatta
ctttcatccgaagctaatgcagcagatgactctaatctggatgagactcgtcaagagata
tctaaactgcaagatgaaatacaagaaaaaatgtatttgctagagaaggttcagagtcga
gtgaatgaagcaggaactaaagctaaagatcttaaaatgtcattggagagtctttgtgat
tcggccaaggcagaaattgatgcattagcagaagcagagaacgaactgatgatgattgag
agagatttacaagaagtcgaaagggttaaaaagcactatgaaggaattatgcaaactaaa
gtccttgctgacctaaaaaatgctgagactgagtatagggagcttgagaatagctgtcag
gagaatcgtcgcaaagcatcaattataattcccgaggatgagattgaggcattaggatgc
tttaaggaaagcaatcctgagaatctcagtgcccaactcactaggttgaccgaaagactt
aagcgtgagacccaaagatttccggaatctattgatgatctcagaatgttatatgagaaa
aaagagcggaaaatatcaagaaaactgcatacttacaaagcctcccaggaaaaaatggaa
gcatgtgaaaaggcactaaacttgagaaggagcaaattcaataggaacgcagctcatctg
aaacgtcagctgacatggcaattcaatggtcacttgaaaaagaaagggatcagtggtcaa
atcaacgttagttttgaagatcagactctctcagtagaggtaaagatgccacatgatgca
tcaagcagctctgttcatgacactagtggactttcaggtggtgaaagatccttctccaca
ttgtgttttgcccttgcacttcatgagatgacagaagcaccttttcgggcaatggatgaa
tttgatgtatttatggatgcagtaagcagaaaaatcagtctggatgctatagtggatttt
gctttggcccaaggttcccagtggatatttataaccccccatgacattagtatggttaaa
aatgacgaaaggatcaagaagcaacaaatggctgctcctcgcgggtga
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