Salvia hispanica (chia): 125216537
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Entry
125216537 CDS
T09851
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shis03009
]
125216537
03036 Chromosome and associated proteins [BR:
shis03036
]
125216537
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125216537
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
Pre-60S particles
Helicases
125216537
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
125216537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125216537
NCBI-ProteinID:
XP_047974233
LinkDB
All DBs
Position
3:29965390..29969636
Genome browser
AA seq
687 aa
AA seq
DB search
MPSVAIAEAQSADKKKIKKHSGVAEMEVEDNNSAEKKLKKEKKSSKKAKLTDLDDSNSDS
PVKISKKEKKRKALEIDDNEEGRSENTSEVKKKKKKMKFVGEDGKEENPNAVSNFRISAP
LREALKVKGIEALFQIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKES
RKTGYGKAPSVLVLLPTRELAAQVAADFEVYGGALGLSCCVLYGGSSYGLQLNQLKRGVD
IVVGTPGRIKDHLESGNIDFRSLKFRVLDEADEMLRMGFVDDVELILGKVEDSSKVQTLL
FSATLPSWVKQISSKFLKPDKKTVDLVGNEKMKASTNVRHFVLPCTASARAQLIPDIISC
YGSGGRTIIFAETKDSVSTLSGVLPGARALHGDIQQSTREVTLKAFRSGKFSTLVATDVA
ARGLDIDDVQLIIQCEPPRDVEAYIHRSGRTGRAGKSGVAVMLYDPRKSNFARIERESGV
KFERISAPQPSDIAKSAGVEAAEKINEISDSVIPIFKAAAEELLNSSDLTPTDLLAKALA
NAAGYTEIKSRSLLTSLENHVTVMLECGRPIFSPSYVYGTLRRFVPEDKVESIQGLSLTA
DGKGAVFDVATEDLDTFLAGQGNAPGVSLQVVTLLPDLQERAPLRGRFGGGGGGRGGFSG
RRGGGRFSGGGGRGSFSRGGGNRNSRW
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgccttccgttgctatcgccgaagctcaatccgccgacaagaagaagatcaagaagcac
tccggagttgcggagatggaggtggaggacaacaattcagctgagaaaaagctcaaaaag
gagaagaagtcgagcaaaaaggccaaattgactgacctcgacgattctaattccgacagc
cctgtcaaaattagtaaaaaggaaaagaagcggaaggctttggaaatcgacgacaatgag
gaagggaggagtgaaaacacctccgaggtgaagaagaagaagaagaagatgaaatttgtg
ggggaggacggaaaagaggagaatcctaatgctgtatccaatttccgaatttcggcgccg
cttagggaggctttgaaggtcaagggaattgaggcgctgttccagattcaggcaatgacg
tttaataccattcttgatggttccgatttggttggaagggcccgcactggtcaggggaaa
acgttggcctttgtgttgcctatattagaatcattgacaaatggtcctgctaaagaatca
aggaagactggatatggaaaggcaccaagtgttcttgttctcttgcccacgagggagttg
gccgcacaggtggctgccgactttgaagtttatggcggagctctagggttgagttgctgt
gtcctgtatggggggtcttcttatggactgcagctgaatcaattgaaaagaggtgttgac
attgttgttggcactcctggtcgcattaaggatcacctagagagcggaaatattgacttt
cgatccttaaagttccgagtgcttgatgaagctgatgaaatgctgaggatgggttttgtt
gatgatgttgaactcattcttggcaaggtagaggattctagcaaggttcaaacgcttctt
tttagtgctactttaccgtcctgggtcaagcaaatatcttccaaatttttaaaaccagac
aagaaaactgttgaccttgttggtaatgagaaaatgaaagccagcaccaatgtaaggcat
tttgtccttccctgcactgcatctgccagagctcagctcattcctgatatcattagctgt
tatggcagtggaggacgcactattatttttgcagagacaaaggattctgtttccacacta
tctggtgtgcttcccggagcacgcgcattgcatggtgacatacaacagtctacccgtgag
gtaactcttaaagcgttcagatcaggcaaattttctacgcttgtggctacagatgtagca
gcacgaggattagacattgatgatgtccagttaattattcagtgtgagcctcctcgtgat
gtagaggcatacattcatcggtctggcagaacaggaagagctgggaaaagtggtgtcgct
gtgatgctttatgatcctaggaagtctaattttgccagaatagaaagagaatcaggtgtg
aaattcgaacgtataagtgctccacagccatctgatatagctaaatcagctggtgttgaa
gctgctgaaaaaatcaacgagatttctgatagtgtgattccaatattcaaagctgctgcc
gaagaactactcaactcttctgatttaaccccaacagaccttcttgctaaagctttggcc
aatgctgccggttataccgaaatcaagagtcgatcacttctcacctcattggagaaccat
gttactgtaatgctcgagtgtggaaggcccattttctcaccttcgtatgtttatggaacg
ctgaggaggtttgtacctgaagataaggttgaatctattcagggtctttcattgactgca
gacgggaagggtgctgtattcgatgtagctaccgaagatctcgatacattccttgcaggg
caggggaatgcgcccggtgtgagcttgcaagtggtgacattattgccagatttgcaagaa
agagccccgttaagaggaagatttggtggtggcggtggtggccgtggtggtttctcgggg
aggagaggaggtggcaggttttctggtggtggtggaagaggatcattttctagaggtggt
ggcaatagaaacagtagatggtga
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