Salvia hispanica (chia): 125216739
Help
Entry
125216739 CDS
T09851
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125216739
Transcription machinery [BR:
shis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
125216739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_31
Motif
Other DBs
NCBI-GeneID:
125216739
NCBI-ProteinID:
XP_047974462
LinkDB
All DBs
Position
3:41436468..41440357
Genome browser
AA seq
557 aa
AA seq
DB search
MGFRLNIKWGGLSVQSPLSTSSSSLPSSYSCRGRDVSYIMTRVSAASVLYGEAETQNDTS
KAQASLSSHQLLEKYLLETRELKVGLGKGSGDSSVYRLLDNDTQISSKEDESVSLTTARA
MQTSQYRLLMKNLDVLEYMFADSDVVRLERDILEQLERLGALRLFNSFLSRTIKSSTSFD
LSKAPTENVDESKVNDSVENRTGKVVVQSGKKELRKLRRNRSLEKESAILQELHSNDLHK
AKLAPARRNSRSRNKKLKIARNEAEMSSGVKMVAELEKLRVVLEKDTGKIPSMSSWAEAA
GVEKSELQRQLHYGWLCRDELLRSTRSLVLFIARNYWGLGVAFEDLIQAGRIGVLQGAER
FDQSRGYKFSTYVQYWIRKSMSTLVARHARGVRIPCTLSKAINQVQKARKSLRTSNGKYP
DDCEIAKFTGLTVAKIVSASKCLRVVGSINEKIGESTSTKYMEIIPDTSTMTPEEAVFRQ
HMIKDVHTLLHGLDSREREVIILRFGLGKSQCKSLEEIGRRFSVSKEWIRRIERAALTKL
RNEESLKILDHYVYLSS
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgggttttaggctaaacatcaaatggggcggtctctcagttcagtcgcctctctccaca
agttcttcatctttgccttcttcatattcttgtagaggcagagacgtttcgtatattatg
acgagagtatctgctgcttctgtcctatatggcgaggccgaaactcaaaacgatacgtcc
aaggcacaagcttccttgtcttcccatcagctcttggagaagtatttgttggaaactaga
gaattaaaggtgggacttggaaagggctccggagatagtagtgtatacaggttacttgat
aacgacactcagatttctagcaaagaggatgagtctgtctcccttaccaccgcacgagca
atgcaaacatcacagtacagattgttgatgaagaatctcgatgtgttggagtacatgttt
gctgattctgacgtggtaaggttggaacgagatattctggagcaattagaaagactcggt
gctctaagattgttcaattcatttctatcaaggaccataaaatcctcgacttcttttgat
ttgtctaaggctccaactgagaatgttgacgagtccaaggtaaatgactcggtggagaat
cgtacaggcaaggtggttgttcaatctgggaaaaaagaactcagaaaattgagaagaaac
agatcattggagaaggaaagtgctattttgcaagaattgcattcaaatgatcttcataag
gctaaacttgcccctgctagaagaaactcaagatccagaaacaaaaagctcaagattgct
aggaacgaggcagagatgtcaagtggagttaagatggttgcagaattggaaaagctgagg
gtggtactggaaaaggatacgggtaaaatccctagcatgagtagctgggccgaagctgcc
ggagttgaaaagagcgagctgcaacgtcagttgcattatggatggctttgtagagacgag
cttttaagaagcacgcgctccttggttttgtttattgcaagaaattactggggacttgga
gtagcatttgaagatctgattcaggctgggaggataggtgtcttgcaaggtgcagagaga
tttgatcagtcaagagggtacaaattctcgacctacgtccagtattggatcaggaaatca
atgtcaacattggtggcgagacatgccagaggagtccgtatcccttgcacattgagcaag
gccattaatcaagtacagaaagcacgaaagtcccttcgtacgagcaatggaaagtatcca
gatgactgtgaaattgccaagtttactggtctcaccgtagctaaaatcgtctcagctagc
aaatgcctcagggttgtgggatcaatcaatgaaaaaataggggaatccaccagcactaag
tatatggagatcataccagatacatcgacgatgacccccgaagaagcagttttcagacag
catatgatcaaggatgtgcacacacttctccatgggttggattcaagagagagagaggta
ataatcctaagattcggactaggtaagagtcaatgcaaatctctggaggaaatagggagg
cgtttcagtgtgagcaaagagtggataagaagaatagagagggctgctcttacaaaactg
aggaatgaggaatctctcaaaattttggaccactacgtatatcttagtagttag
DBGET
integrated database retrieval system
