Salvia hispanica (chia): 125216775
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Entry
125216775 CDS
T09851
Name
(RefSeq) polyadenylate-binding protein 7-like
KO
K13126
polyadenylate-binding protein
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125216775
09123 Folding, sorting and degradation
03018 RNA degradation
125216775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125216775
03041 Spliceosome [BR:
shis03041
]
125216775
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125216775
mRNA cycle factors
Stress granule specific factors
125216775
Spliceosome [BR:
shis03041
]
Complex C
Other components
Complex C specific factors
125216775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_RdRP1_2
RRM_occluded
Nup35_RRM_2
RRM_7
RRM_3
Motif
Other DBs
NCBI-GeneID:
125216775
NCBI-ProteinID:
XP_047974497
LinkDB
All DBs
Position
3:complement(27613316..27617698)
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AA seq
607 aa
AA seq
DB search
MATESAVPIPASLYVGDLHPDVSDAVLLEAFKEFNSLTSVRVCLDSATGRSLGYAYVNFD
SPHDALQAMELKNHLTLNGKAIRVMWSHRDSDGRKSGVGNVFVKNLSDSIDSVKLQEMFQ
KFGVIVSCKVVTSDDGKSRGYGFVQFESEASAKEAIEKLNGTDDGGKQMYVSKFIKKSDR
AVASHEVKYTNLYVKNLDTGISEEMFREKFSQYGKIVSLVISKDENGASRGFGFVNFDKA
EDAKSAVEALNGSQLASKVLYVARAQKKSERQEMLRLEFEEKRKEQILKYQASNVYVKNI
DDEISDDELRLHFSQCGTITSATIMRDDKGISKGFGFVCFSTPEEANKAVYTFHGLILRR
KPLYAAIAQRKEERQVQLQVIHAQRLAGLSGPPSPVMQGGYSHFYYPPGVVPQIPAQPSL
LYQQPGIRPGWRANGIPNPSRPVFHPSPIPLPPNSSRQRQRARMNGNILPHVPGLAYPSH
LQRPVHPLASSKDSNNQQPILMSSGVGGNGSEMLSSLLAAAPPDQQKHILGERLYPLVAH
HQPELAAKITGMLLEMDNSELLVLLDSPESLSSKVEEAVQVLKLSNAKVSNSDAPRSNYL
SARVAVK
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggaatccgcggttccgattccggcgtctctgtacgtcggagacctgcatccc
gacgtgagcgatgctgttctgctcgaggctttcaaggagttcaattcgctgacgtcggtg
cgcgtctgccttgattccgccaccggccgctcgctcggttacgcctacgtcaacttcgat
tcgcctcacgacgcccttcaggctatggaattgaaaaatcatctcacactgaatggaaaa
gcgattagggttatgtggtcacaccgtgactcggatggacgaaaaagtggagttggaaat
gtctttgtcaagaatttgagtgactcaatagacagcgttaagcttcaagaaatgtttcag
aagtttggtgttattgtatcttgtaaagtagtcacttctgatgatgggaagagcagagga
tatggctttgtccagtttgagtctgaagcctcagcaaaagaggccattgagaagctcaac
ggcacagatgatggaggaaaacagatgtacgttagtaaatttatcaaaaaaagtgaccga
gctgttgcttctcacgaggtgaagtacacaaatctgtatgtgaagaatctagatacaggt
atatctgaggaaatgttcagggaaaagttctctcaatatggaaaaattgtgagcttagtc
atctcaaaagatgagaatggtgcatcaagaggttttgggtttgttaatttcgataaagca
gaagatgccaaatctgcagtagaagctttgaatggatcacaacttgcttcaaaggtctta
tatgtcgcccgagcacaaaaaaaatcagaacgccaggaaatgttacgcctcgagtttgag
gagaaaaggaaggagcagatcttgaaataccaggcatcaaatgtgtatgtgaagaatatt
gatgatgaaatctctgatgacgagctaagactgcattttagtcagtgtggcacgattacc
tctgcaacgataatgagagatgataaaggtataagcaaagggttcggatttgtctgcttc
tcaacaccggaggaggcaaataaagctgtatatacattccatggtttgattttgcgaagg
aagccattatatgcggcaattgctcagagaaaagaggaaagacaagttcagttgcaggtt
atacatgctcaacgtctggcaggattatcaggaccaccgtcacctgttatgcagggtgga
tactcacatttttattatccccccggagttgttcctcagatacctgcacagcctagtctg
ttatatcagcagccaggaatcaggccaggatggagggctaatggcattccaaatccttct
agacccgtttttcatccatcccccatccccttgccccccaacagttctaggcaaaggcaa
agagcaaggatgaacgggaatattctaccacatgttcctggtctcgcatatccatcacat
ttgcaacggccagtgcatcccttggcttcatctaaagattccaacaatcagcagccgatt
cttatgtcttctggggttggtggcaatggatccgaaatgttaagcagcctgctcgctgca
gctcctccagatcaacagaaacatattctcggggagcgcctttatcctctagttgctcat
caccagcctgaactagcagcaaagataacaggcatgcttctggagatggacaacagcgaa
ctactggtgctgttggattcaccggagtcgctatcctccaaggtcgaagaggcggttcag
gtcctcaaactatcaaatgccaaagtgtccaattcagacgccccgcgctcaaattacctc
tctgctcgagttgctgtcaaatga
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