Salvia hispanica (chia): 125216977
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Entry
125216977 CDS
T09851
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
shis
Salvia hispanica (chia)
Pathway
shis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125216977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shis03400
]
125216977
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125216977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
125216977
NCBI-ProteinID:
XP_047974737
LinkDB
All DBs
Position
3:complement(25330787..25336767)
Genome browser
AA seq
941 aa
AA seq
DB search
MGDNFEEHNKLPELKLDAKQAQGFISFFKKLDADPRAIRFFDRKDYYTTHGENATFIAKT
YYHTTTAVRQLGSGSDAISSVSVSKNMFETVARNLLLERTDHTLELYEGSGANWRRVKSG
SPGNLGSFEDILFANNEMQDSPAIVAVLANLRESGCTVGLGYVDLTKRVLGLAEFPDDSH
YTNLESTLVALGCKECLLPGDIAKSSDFKSLTDALSRCGVMVMERKKVEFKGRDLVQDLG
RLVKGSIDPVRDLLAAFEYAPSALGCVMSYADLLADETNYGNYKIQRYDLDSYMRLDSAA
MRALNVMESKSDANKNFSLFGLLNRTCTAGMGKRLLHMWLKQPLLDVDEINSRLDLVQAF
VEDAALRQDLRQHLKRISDIERLTRSLEKKKASLVHVVKLYQSTIRLPFIKKALEQYNGQ
FALLIKDRYLDPLDTWTDDKHLNRFIALVETSVDLDQLENGEYMISSGYDSHLLTLKNEQ
DSLEQAIHDLHRKAANDLDLPIDKALKLEKGTQYGYAFRITKKEEPKVRKKLNVHFIVLE
TRKDGVKFTNTKLKKLSDQYQKVVEEYKSCQRELVARVVQTAASFSEVFEGLAWTLSEMD
VLLSFADLAAGSPTAYTRPAISPSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLLRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQIGSFVPCDNASISIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATNRSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIQAPTLFATH
FHELTALAPESASNEQSSKKLPGVSNYHVSAHIDLSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVALARAKASELEDFSPAAILPSDPKEVGTKRKRAEDSDDVTKGAERARQFL
KDFSELPLDKMELEQALEQVRKLKEGLEKDAVNSCWLQKFF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacaattttgaggagcacaacaagcttcccgaactcaaactcgatgccaaacaa
gctcaagggtttatctcattcttcaaaaagctagacgctgacccacgagccattcgattt
tttgatcgcaaggattactatactacacatggcgagaatgcaaccttcattgccaagacc
tattaccacactacaactgctgtgcgccaacttggaagtggctcggatgccatttctagt
gtcagtgtaagcaagaatatgtttgagactgtggcccgcaaccttcttctggagaggacc
gatcacactcttgaactgtatgaaggcagtggagcgaattggagacgtgtgaaaagtgga
agccctggaaatttaggcagttttgaagacattctgtttgccaataatgaaatgcaggac
tctccagcaattgtggctgtcctagcaaatttacgtgaaagtggatgtactgtagggtta
ggctatgtcgatcttactaagagagtacttggattggctgagttccctgatgatagccac
tatacaaatttggagtcaacccttgttgctcttggctgtaaggaatgccttctgcctggg
gatattgcaaaatctagtgattttaaatcattaactgatgcattgtccaggtgtggtgta
atggtgatggaaagaaaaaaggttgagtttaaagggagggatttggtacaagatcttggt
aggcttgtgaaaggctcgatagatccagtaagagacctgcttgctgcatttgaatatgca
cccagtgctcttgggtgtgtaatgtcttacgcagatctacttgcagatgagaccaattat
ggtaactacaagatccaaaggtatgatcttgatagttatatgagattagattctgctgcg
atgagggcactaaatgtcatggagagcaaatctgatgctaataaaaactttagcttattt
ggtctcttgaatagaacctgcactgcaggaatgggcaagcgcctactgcacatgtggctg
aaacaacccctgttagatgtagatgagataaactctaggctggatttggtacaagctttt
gtggaggatgctgccctacgccaagatctaaggcagcatttgaaaagaatttcagatata
gaacgacttacgcgctctcttgagaagaaaaaagctagtctagttcatgttgttaagctt
tatcagtctaccatcaggcttccattcattaaaaaagcattggaacagtacaacgggcaa
tttgctttgttgattaaggataggtacttggatcctctagacacatggactgatgataag
catttgaacagattcattgctcttgttgaaacttctgtcgacctcgatcaacttgagaat
ggagaatacatgatttcatcagggtatgattcacatttattgactttgaaaaacgaacaa
gattctctggaacaagcaatacatgatttacacagaaaagctgctaatgatcttgatctg
cccattgataaagctctgaaactagagaaagggacacaatatggatatgcttttaggatt
accaaaaaggaggagccaaaagtgaggaaaaagctcaatgtgcactttattgttcttgaa
actcgtaaagatggggtgaagttcacaaacactaagctaaagaaactaagtgaccaatac
cagaaggtggttgaggaatataaaagttgccagagagaattggttgcccgagtagtccaa
actgctgcaagtttttctgaggtgtttgaaggattagcttggacgctttccgagatggat
gttttacttagttttgcagatttggctgctgggtcccccactgcttacacacgaccggcc
atctctccatcagatgagggagatattattttagaagggagtcggcatccttgtgttgaa
gctcaagactgggtgaactttattcctaatgattgtaaacttcttagggggaaaagctgg
ttccagattatcacaggacctaatatgggtggaaaatcaacattcatacgacaggttggt
gtgaatattctaatggcacaaatcggttctttcgttccatgtgacaatgctagcatttct
atacgtgactgcattttcgctcgtgtgggtgctggtgactgccagctacgtggggtttca
acattcatgcaagaaatgctagagacagcatctatcttgaaaggagcaacaaacaggtcg
ttaatcatcattgatgagctaggtcgtggcacgtcaacatatgatggatttggcctagct
tgggcaatctgtgagcatatagttgaagtgatacaagcacccacactatttgcaactcac
tttcatgagctgactgccttagctcctgaaagtgctagcaacgagcaatcttccaagaaa
cttccaggagtatctaattatcatgtgagcgcacacattgacttgtcaagtcgcaagctt
acgatgctttacaaggttgaaccaggagcctgtgatcaaagttttggcatacatgttgcg
gaatttgctaacttcccagaaagcgttgttgcccttgcccgagctaaggcttctgaatta
gaagatttctcaccagcagcaattttaccatctgatcccaaagaggttggaaccaaacgg
aagcgagcagaggactctgatgatgtaactaagggtgccgaacgggctcgccagttcttg
aaggacttctctgagctaccattagataagatggagttggaacaagcactagaacaagtc
agaaaattgaaagaagggttagagaaggatgcagttaacagctgctggctccagaaattc
ttctag
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