Salvia hispanica (chia): 125218008
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Entry
125218008 CDS
T09851
Name
(RefSeq) exopolygalacturonase clone GBGE184-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis00040
Pentose and glucuronate interconversions
shis01100
Metabolic pathways
Module
shis_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125218008
Enzymes [BR:
shis01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
125218008
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Beta_helix
Motif
Other DBs
NCBI-GeneID:
125218008
NCBI-ProteinID:
XP_047975557
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Position
4:complement(43197314..43199277)
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AA seq
404 aa
AA seq
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MATSCVHMMGSLALSISCLIIINAIAAAGEQRRLLQAETVFDITKYGAKGDGTTDDAMSL
VQAWNAGCDSTGGARILVPPGKYMMGEVVLSGECKAAPPMIIDIQGTLLANPNPSSYSNQ
KWILIEHVDNIKITGGGTLNAQGANAWKYAKEDAHMPVSFTFQSSQNGDISNLNLVDAMG
FHSKLIDSINIKVTKMTITAPDESPNTDGIHLSNATNVEITDSVIGTGDDCISIGTGSKN
IFVKNVKCGPGHGLAVGSLGKRPDELSVGNITFSSCTLTGTTNGARIKSYHKSPVMTATN
IVFEDLTLDSVKNPIIIDQHYFSKMVAEQSNVKISDVHFRRIKGTTISEIPILFNCSTTN
PCDNIELADIDLKPMGEAKTVSSACQSATGIKASGTVIPPAPTC
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggctactagttgtgttcatatgatgggctccctggccctaagcataagctgtttgatc
attatcaatgccattgctgctgccggcgaacaacgccgcctcctgcaggctgagaccgtt
ttcgacatcaccaaatatggcgccaagggcgatggcaccaccgatgatgcaatgtcgctt
gttcaagcatggaatgccggatgcgacagcacagggggcgcgaggattttggtcccgccc
gggaaatacatgatgggggaagtagtcctaagtggagagtgcaaggcagcaccgccaatg
atcatcgatattcagggcaccctgttggcaaatcccaacccgagctcctacagcaaccag
aagtggatcttgattgagcacgtggacaacattaagatcacgggaggaggcacccttaac
gcccaaggagcaaatgcatggaagtacgccaaagaagacgcgcacatgcccgttagtttc
acgttccaatcgtcgcaaaatggggacattagcaacctaaatttggtggacgctatggga
ttccatagcaagttgatcgacagtattaacatcaaggtgacgaaaatgaccatcactgcc
cctgacgaaagccccaacacggacggaatccatctcagcaatgccaccaatgtggagatc
accgactccgttattggaaccggcgatgactgcatctccattggcacaggcagcaaaaac
atctttgtcaaaaatgtcaaatgcggacccggacatggtcttgctgtggggagtttgggg
aagcgtccggacgaattgagcgtggggaacatcaccttcagtagttgtaccttgacgggc
acaaccaatggtgcccgaatcaagagctaccacaagtcgccggtgatgactgccaccaac
atcgtgttcgaagatctgaccttggatagcgtcaagaatcccatcatcatcgatcagcat
tacttctccaagatggttgctgagcaatccaacgtcaaaatcagcgacgtccacttcaga
agaatcaagggcaccacaatctccgaaattcctatcttgtttaactgcagcacaaccaac
ccgtgcgacaacatcgaattggctgacattgacttgaagcctatgggggaggccaagacc
gtctcatccgcctgtcagagcgccaccggaatcaaggcttccggcaccgtcatccctcct
gctcccacttgctag
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