KEGG   Salvia hispanica (chia): 125218155
Entry
125218155         CDS       T09851                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
shis  Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:shis00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:shis03009]
    125218155
Ribosome biogenesis [BR:shis03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    125218155
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz EIF3I WDR55 Beta-prop_TEP1_2nd NBCH_WD40 Beta-prop_TEP1_C Beta-prop_EML Beta-prop_HPS5 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_IP5PC_F Beta-prop_DCAF4 Beta-prop_VPS8 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd WDR54 Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_DCAF12 Beta-prop_WDR75_2nd Beta-prop_LRRK2 PEP5_VPS11_N DUF5984 Beta-prop_WDR19_2nd Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 125218155
NCBI-ProteinID: XP_047975725
LinkDB
Position
4:complement(28457082..28459977)
AA seq 452 aa
MEPEIIIASSPTDAGVSCWDLRTGAEHLRYRSCASPLHGLTSVAGRFLASSQVRDAKSST
SGSILYWSWNKAQVEVRSFPAEPIRPIACNSQGTYIAGGGISGDIYFWEVATGKLLKKWH
AHYRAVTCLAFNDDQSLLISGAEDGCVRVWSLFLIFDAVRREETRNLFEYSFHEHSLRVT
DVKTGYGGCNAIIVSASEDRTCKVWSLSRGKLLRNVLFPGAIDAISLDPGEHVFYAGGRD
GKIHIAALNAPMSQNSNNGPHVLGSLAEHSKAVTCLASSADGFLLVSGSEDGMIRVWDTR
TRNIIRVFRHAKGPVNNVMVTRQPQLLNPRTSAPTASSRKQALTLPPPLEKFANSPDENT
HVKVLIGGQDPSNGITDSSYVSVQAMEAQIRELQQKGSTAAAEVDVERLKNDQLRSVQMI
QHWKTMYDDLHQFCVDELLEDVRTERPTHHNQ
NT seq 1359 nt   +upstreamnt  +downstreamnt
atggagcctgaaataataatcgcctcatctccgactgacgccggcgtcagctgctgggac
ctccgcaccggggcggagcacctccgctacaggtcatgcgcctcaccgctgcacggtctc
acctccgtggccggccgcttcctcgcttcttctcaagtccgagacgccaagtcttctact
tctggctccattctctactggtcgtggaacaaggctcaggttgaagtgaggagcttccca
gccgagcctattaggccgattgcgtgtaacagccaaggaacttatattgcgggaggaggc
atttctggagatatctacttttgggaggttgcgactggaaaattgcttaagaagtggcat
gcgcattacagggctgttacttgcttggcttttaacgatgaccaatccctcttgatttca
ggggcggaggatggatgtgttcgtgtttggtcgttgttcctgatatttgatgcggttagg
agggaagaaacgaggaatcttttcgagtatagtttccacgagcattctttgagagtcacc
gatgtaaaaactggctatggtgggtgtaatgcaatcatcgtgtctgcttccgaggatcgt
acatgcaaggtgtggagcttatcgagaggaaaattgttaagaaatgttctcttccctgga
gcaatagatgcaatttcccttgaccccggggagcatgttttctatgcaggtggtagagat
ggtaagatacacattgctgccctaaacgctccaatgagccaaaacagcaacaatggaccg
catgtacttggttcactagctgagcacagcaaagctgtaacctgcttggcttctagtgct
gatggatttctattagtttctggatctgaggatggtatgattagggtgtgggatacaaga
actcgaaacatcatccgtgtctttaggcatgcaaaaggtccagttaataatgttatggtc
accagacaaccacaattgcttaatcctcggacatctgctccgactgcttcatcaaggaag
caagcattaacattacctcctccgctcgaaaaatttgccaattcacctgatgagaacacc
catgttaaagtactcattgggggccaggacccttccaatggaatcacagactcttcttac
gtcagtgttcaagcaatggaggctcaaattcgagaactacagcaaaagggatcgactgca
gctgcagaagtggatgtggaacgactgaaaaacgaccaactacgatccgtgcaaatgatc
caacattggaagacgatgtacgatgatctgcatcaattctgtgttgacgaacttctggaa
gatgttcgtactgaaagacctactcatcacaatcagtga

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