KEGG   Salvia hispanica (chia): 125218387
Entry
125218387         CDS       T09851                                 
Name
(RefSeq) LOW QUALITY PROTEIN: protein TRANSPARENT TESTA GLABRA 1-like
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
shis  Salvia hispanica (chia)
Pathway
shis03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    125218387
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:shis04121]
    125218387
   03036 Chromosome and associated proteins [BR:shis03036]
    125218387
Ubiquitin system [BR:shis04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     125218387
Chromosome and associated proteins [BR:shis03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     125218387
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40 Beta-prop_EIPR1 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Gbeta Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_Aladin Beta-prop_WDR41 Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 EIF3I Beta-prop_WDR90_POC16_2nd MIOS_WD40 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR19_1st
Other DBs
NCBI-GeneID: 125218387
NCBI-ProteinID: XP_047975999
LinkDB
Position
4:complement(47090527..47091795)
AA seq 333 aa
MENSTQESHPRPENVVTYESPYPIYAMAISAVNRRRVAVGSFIEELKNRVDILSFSEDSS
SLKPVPSLSFDHPXPPTKLLFHPSVSAPSNLLASSGDFLRLWEVKDSSIAAVSTLNNSKT
SEYSAPLTSFDWNEVEPRRIGTSSIDTTCTIWDIDKGVVETQLIAHDKEVYDIAWGEAGV
FASVSADGSVRIFDLRDKEHSTIIYESPMPDTPLLRLAWNKQDLRYMATILMDSNKIVIL
DIRSPTMPVAELERHSASVNAIAWAPQSARHICSAGDDAQALLWELPTVAGPNGIDPMSM
YSSGAEINQLQWSAAQPDWIAVAFANKMQMLKV
NT seq 1002 nt   +upstreamnt  +downstreamnt
atggaaaattcgacccaggaatcccacccccgacctgaaaatgtcgtcacctacgaatcc
ccctacccaatctacgccatggccatctccgccgtgaaccgccgccgcgtcgccgtcggc
agcttcatcgaggagctgaagaaccgcgtcgacatcctctcattctcggaagattcatcc
tctctcaagcccgtcccttctctctccttcgaccaccctntacccccgacgaaattactc
ttccacccctccgtctccgccccttccaacctcctcgcctcctccggcgacttcctccgc
ctctgggaggtcaaggactcctcaatcgcggccgtctccacgctcaacaacagcaaaacc
agcgagtactcggctccgctgacctcattcgactggaacgaggtcgagccgcggaggatc
ggaacgtcgagcatcgacacgacctgcacgatttgggatatcgacaagggcgtggtggag
acgcagctgatcgcgcacgacaaggaggtttacgacatagcgtggggcgaggctggggtt
ttcgcgtcggtttccgccgacggctccgtgagaatcttcgatttgagggataaggagcat
tcgacgatcatctacgaaagccccatgccggatacgccgttgctgagattggcttggaat
aagcaggatttgaggtatatggcgacgatcttgatggatagcaataaaattgtgatattg
gatatcaggtctccgacaatgccggtggcggagctggagaggcatagtgctagtgtgaat
gcaattgcgtgggcgccgcagagtgctaggcatatttgctctgccggtgacgatgcccag
gcgttgctttgggagctgcccacggtggctggccccaatgggattgatcccatgtccatg
tactcttccggtgcagagattaaccagctgcagtggtcggccgcccagccggattggatt
gccgttgcgtttgccaacaagatgcaaatgctcaaagtttga

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