Salvia hispanica (chia): 125218691
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Entry
125218691 CDS
T09851
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125218691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125218691
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
125218691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
125218691
NCBI-ProteinID:
XP_047976379
LinkDB
All DBs
Position
4:35782063..35789250
Genome browser
AA seq
912 aa
AA seq
DB search
MEIDHPEGETPIKSDRLRNLSSKGSFPTSVAKLSGSSRIIPSETDFHFYNNFEEFKNPIA
QINDKSSTLLSIIGASEDLLGKPILLPDDKSVELDEDLAFDWLVNVNDEMYERLDASLDD
FKMLRDKEEESGVRAMRVDHDGEENGFQMVYGRKNRKGSGGAERNVEGVAKGGQEVKVAE
KVKPKVPFHIPSIPRPQDEYKIIVNNANQPHDHIWLERSEDGSRFLHPLEKLSVLDFVDS
SESTVEPEKPLPLEVTPFKFVEEVKDLKQLAIKLRSVDEFAVDLEHNQYRSFQGLTCLMQ
ISTRTEDFVIDTLKLRVHIGPHLRELFKDPTKRKVMHGADRDIHWLQRDFSIYVCNMFDT
GQASRVLKMERFSLEHLLNHFCGVQANKQYQNADWRIRPLPAEMIKYAREDTHYLLYIYD
LMRARLLRSPAESESSDPPLIEVYKRSYEICTQLYQKELLTDTSYLHIYGLQDADLSAQQ
LAVVSGLCEWRDIVARAEDESTGYVLPNRTLIELAKQMPLTPNQMRRALKTKHPYIERNL
SSVVSIIRISIQNAASFEEACKYLKEKRMESLHETRTLAPEESEVLPVEIPEMSKAAEEI
EFAQNSGVPIDAVVESSLASRQHNDESHDFKSSRTKVNKKGNMNDGAAYQGATSPAGDAK
YRHTTTNPPHSAEATVETLKKPSRAFGALFGNSAKRKFNLDKPEKEDSKLEQIKSTVSLP
FHTFSGGDERLHSEVKESAKIPEVVREEEPPAPATDSSLVDIIVLDDSDIEDSDDANLDA
TRDDRSRQVENNETGSTLEGDEPISLSDLSSSFRKCFPSLEQAMGSKVVDKSRPAEASIE
VKPFDYEAARKQVIFGGQRKVEPLVEDDGSSKRKERRKGSAAVGKDDEPSEHPQGRRRQA
FPASGNRSATFR
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggaaattgatcaccccgaaggcgagaccccaataaaatccgatcgtctacgcaatctc
tcgtccaagggatcttttcccacttccgttgcgaagctttcagggtcctcgcgcatcata
ccttcggaaacggatttccatttctacaacaactttgaagaattcaagaaccctatcgcc
caaatcaacgacaaatcctccacccttttgagtattattggggcgtcagaggatttgctc
gggaagccaattcttttgccggatgacaaaagcgttgaattggatgaggacttggcgttt
gattggctggtgaatgtgaacgacgagatgtacgagaggcttgatgcatcgttggatgac
tttaagatgctgcgggataaggaagaggagagtggtgtgagggccatgagagtagaccat
gacggtgaggaaaatgggtttcagatggtttatgggaggaaaaatagaaaaggttcggga
ggggcggagaggaatgtggagggtgtggccaaaggggggcaagaagtgaaggtggcggag
aaagtgaagcccaaggttcctttccatataccttctattccgcggccgcaagacgagtat
aagattattgtgaataacgcgaatcagccgcatgatcatatctggttggagaggagtgag
gatgggtctaggttcttgcatcctttggagaaactctctgttcttgattttgttgattca
agtgaaagtaccgttgagcctgaaaaacctcttcctttagaagtcacacccttcaagttt
gtagaagaagtgaaagatttgaagcagttagccataaaattacgtagtgtggatgaattt
gcggttgatttagaacacaaccaatacagatcttttcaaggtttaacttgcttgatgcaa
atatcgacaagaactgaggattttgtcatagacactctgaaacttcgtgttcacattggt
ccacaccttagagagttattcaaagacccaactaagagaaaggtaatgcatggagcggat
cgggatattcattggcttcaacgcgactttagcatttatgtctgcaatatgtttgacaca
ggacaggcgtccagggtattgaaaatggaaagattcagtctggaacacctgttgaatcat
ttttgtggagttcaagcaaacaaacaataccaaaatgcagattggcggatcagaccactt
cccgctgagatgattaaatatgctagagaagatacacattatttgctgtacatatatgat
cttatgagggcaagattactaagatcacctgcggaatctgaaagttctgatcctcctctt
atcgaggtctacaaaaggagttatgaaatttgcacccaactttatcagaaagaactcctg
acagacacttcctaccttcacatttatgggttgcaggatgctgatcttagtgctcaacag
ctagcagttgtttctggactttgtgaatggagggatattgttgctcgtgcagaagatgaa
agcactggttatgttttgccaaataggactcttatcgaacttgctaaacagatgcctctc
acgccaaaccagatgcgtcgggctttgaagaccaaacatccatacattgagcggaatctt
agttcagttgttagtattatacgtatctctatccaaaatgctgcttcatttgaggaggcc
tgtaaatatctaaaggaaaagcgtatggaatcgttacatgaaacgagaactttggctccg
gaagaatctgaagttttgcctgttgaaatacctgagatgtcgaaagctgcggaggaaatc
gaatttgcacagaatagtggtgtacctattgatgctgtagttgagagctcattagcttca
agacaacataatgatgagtctcacgacttcaagagttctaggactaaagtgaataaaaaa
ggtaatatgaatgacggtgctgcttatcaaggtgcaacatctcctgcgggtgacgccaaa
tatagacacactactacaaatccaccgcattcggctgaagcaaccgttgagacgctaaaa
aagccatcccgtgcctttggggcattgttcggaaactcagccaaaaggaagttcaatctt
gataaaccagagaaagaagactccaaactagagcagataaaatcaacagtgagtctccct
ttccacacattttcaggcggagatgaaagattgcattcagaagtcaaggaatctgcaaag
attccagaagttgtacgtgaagaagagcctcctgctcctgcaactgattcaagtttagta
gatattattgttttggatgattcagacattgaggattcagacgatgccaatttagatgct
accagagatgaccggtccagacaagtcgaaaacaatgaaaccggctctactttggaagga
gatgaacccatatcattatcggatctgtcctccagcttccggaaatgctttccatcacta
gaacaagccatgggttctaaagtggtggacaaatctcgaccagcggaagcctccatagag
gtgaaaccctttgattatgaagctgctcgcaaacaggtcatatttggaggccagaggaag
gtggaacccttggtggaagatgatggcagttcgaagagaaaagagaggagaaaaggttct
gctgctgtaggcaaggatgatgagccatcagaacacccacaaggtagacggcgtcaggct
tttccagcatctggcaaccgcagtgcaacctttcgctga
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