Salvia hispanica (chia): 125218824
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Entry
125218824 CDS
T09851
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shis04131
]
125218824
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shis04147
]
125218824
Membrane trafficking [BR:
shis04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
125218824
Exosome [BR:
shis04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125218824
Exosomal proteins of bladder cancer cells
125218824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
EIF3I
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
TPR_COPA_B
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_IFT122_1st
WD40_RFWD3
NBCH_WD40
Beta-prop_SPT8
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_At4g14310
Beta-prop_RIG_2nd
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
125218824
NCBI-ProteinID:
XP_047976560
LinkDB
All DBs
Position
4:complement(17944082..17949964)
Genome browser
AA seq
1218 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LSQMNADFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVLFHSRQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILSAHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDSVFYVKDRFLRSFEYSTQKDTQLIPIRRPG
SNGLNQAPRTLSYSPTENAILVCSDVDGGSYELYVIPKDSYGRGDTAQEAKRGAGGSAVF
VARNRFAVLEKSSNQVLVKNLKNEVVKKSVLPIATDAIYYAGTGNLLCRAEDKVVIFDLQ
QRIVLGDLQASFVRYVVWSQDMESVALLSKHSIVIADKKLVHRCTLHETIRVKSGSWDDN
GVFIYTTLTHIKYCLPNGDSGIIKTLDVPVYVTKIYGNTIFCLDRDGKNRPIIIDSTEYI
FKLSLLKKRYDHVMSMIKNSELCGQAMIAYLQQKGFPQVALYFVKDERTRFNLALESGNI
EKALESAKKIDEKDYWYRLGVEALRQGNAGIVEYAYQKTKNFERLSFHYLITGNLDKLSK
MMKIAEVKNDVMGQFHDALYLGDVRERVKILENAGHLPLACITASIHGLHDVVERLSANL
EDNVPSLPEGRKASLLIPPSPVLCAGDWPLLMVSKGIFEGSLDDAGKGAEEEYEEAADAD
WGESLDIGDVDNLQNGDINMGLDVEDVHNENDEEGGWDLEDLDLPPDADTPKAATNARSS
VFVCPTPGMPVSQIWVQKSSLAAEHAAAGNFDTALRLLSRQLGICNFAPLKSQFIDLQLG
SHSYLRACTSAPVISIAVERGWSESASPNVRGPPALIFNFSQLDEKLKAGYKATTTGKFS
EALRHFLSILHTIPLVVVETRREVDEVKELVIVVKEYILGLQMELKRRELKDDPVRQQEL
AAYFTHCKLQPPHLRLALTSAMTVCFKARNLSTAANFARRLLESNPNNENQARQARQVLQ
AAERNMTDATQINYDFRNPFVVCGATYVPIYRGQRDVTCPYCTTHFVPSQQGQLCTVCDL
AAVGADASGLFCSPSQIR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgaaattcgagactaagagcaatcgagtgaaaggcttgagctttcacagcaag
cgcccatggatcctcgcaagtcttcacagcggcgtgatccagctctgggattaccgcatg
ggcaccctcatcgaccgattcgatgagcacgacggccccgttcggggcgtccatttccac
aaatcccagccgcttttcgtctccggaggtgatgattacaaaattaaggtgtggaattat
aaattgcataggtgcctatttactcttcttggccatcttgactatatccggactgtccaa
ttccatcatgagtatccttggatagtaagtgcaagtgatgatcagacaatcagaatatgg
aactggcagtcacggacttgcatttctgtgttaacggggcacaaccactatgtcatgtgt
gcttcatttcaccccaaagaagacttggttgtttcagcctctttggatcagactgtccgt
gtttgggatattggtgccttgaggaagaaaacagtatctcctgctgatgacattctacga
ttatctcaaatgaatgcagacttctttggtggtgttgatgctgttgtgaagtatgtactg
gaaggtcatgatcgaggggtcaactgggcttcttttcatccaactctccctctgattgtt
tctggagctgatgaccgccaagtaaagatctggcgcatgaatgatacaaaagcttgggag
gtggacacattgagaggacacatgaataatgtttcctgtgtcctgttccattcaaggcag
gacattattgtatcaaattcagaagataagagcatcagagtttgggatgctactaaaaga
actggcttgcagacatttcgcagggagcatgacaggttctggatcctctctgcccacccc
gagatgaatctacttgctgctggtcatgatagtggcatgattgtttttaagcttgagaga
gaacgccctgccttttctgtcagtggggactctgtgttttatgtcaaggaccggtttctg
cgctcttttgagtattccactcagaaagatacacaactgattccaatccgtcgtcctggc
tctaatggtttgaatcaagcgccacgaactctctcttacagtcctactgagaatgcgatt
ttggtttgctcagatgtggatggtggttcatatgagctctatgttatacccaaagatagc
tacggcagaggtgacacagctcaagaggcaaaaagaggtgcgggtggttcagctgttttt
gtggctcggaataggtttgctgtgcttgagaagagcagcaaccaagtcctggtcaagaac
ctaaaaaatgaagtagtgaaaaagagtgttctgcctatcgctactgatgctatatattat
gctggtactgggaacctgctctgccgggccgaggacaaggttgtcatttttgatctccaa
caaagaattgttcttggagatcttcaagcctcttttgttaggtatgtggtttggtctcag
gatatggagagtgttgcgttactgagcaagcattcaattgtcattgctgataaaaagctt
gtgcaccgctgcactcttcatgagaccattcgtgtcaagagcggatcatgggatgataat
ggtgtttttatctacaccacactgacacacattaagtactgcctgcctaatggggatagt
ggaattataaagaccttggatgttccagtgtatgtaacaaagatatatgggaatacaatc
ttttgcctggaccgagatgggaaaaaccgtcctatcattattgattccacagaatatatt
tttaagctgtccctgctgaagaagagatatgatcatgtaatgagcatgataaagaattca
gaactatgtggacaagccatgattgcatatttgcaacagaagggcttcccacaagttgct
ctctattttgtaaaggatgagagaactcgcttcaacttagcccttgaaagcggtaacatt
gagaaagccctagaatctgctaaaaaaattgacgagaaggattactggtacaggctagga
gtagaggctcttcggcagggaaatgcaggaattgttgaatatgcataccagaagacaaag
aactttgagaggctttcttttcattatctcataactggcaatctggacaagttgtcgaaa
atgatgaaaattgctgaggtgaaaaatgatgttatgggccaatttcatgatgcgttatat
cttggtgatgtgcgagagcgtgtgaaaattctggagaatgcgggtcacttgccccttgct
tgcataacagcttctattcatgggctccatgacgtagtggagcgtctgtctgcaaacctg
gaagataatgttccttctcttcctgaagggagaaaagcttctctgttgatccccccaagt
ccagtgctatgcgctggagattggcctttattaatggtgagtaaaggcatatttgagggt
tctcttgacgatgcaggtaaaggtgcagaagaagagtatgaagaggctgcagatgctgat
tggggtgagtcgttggatattggtgatgtggataatctgcagaatggagacattaatatg
gggctggatgtggaagatgtgcacaatgagaatgatgaggagggaggatgggatcttgag
gatctagatctgcctcctgatgccgatacaccaaaggcggctactaatgcccgttcttct
gtttttgtttgccccacacctggtatgcccgtaagccaaatttgggtccagaagtcatct
cttgctgctgaacatgcagctgctggaaactttgatacggcactgcgtttattgagccgt
cagttagggatatgcaatttcgcccctctaaagtcacaatttattgatcttcagttgggc
agtcacagttacttgcgtgcctgtacgtcagcacctgtaatatctattgcagtagagaga
ggctggagtgaatcagcgagccccaatgtgcgaggcccccctgctcttatcttcaatttc
tctcaactagacgagaagctgaaggctggttacaaagcaacgaccactggaaagttttct
gaagctcttcgacatttcctgtcaattcttcacacaatccctctggttgtggttgaaaca
agaagagaggtggatgaagtgaaggaattggttattgtagtaaaggaatatatcctcggc
ttgcaaatggagcttaagaggagggaactgaaggacgatccagttcgtcagcaggaactt
gcagcatatttcacccattgcaagctccagcccccgcacttgagacttgcgctgaccagt
gcaatgactgtttgcttcaaggcaagaaatctgagtactgcagccaactttgcaaggcgg
cttctggagagtaatccaaataatgagaatcaagcgagacaggctcgccaggttctccag
gctgctgaaaggaatatgacggatgcaacacagatcaactatgattttagaaatcctttt
gttgtgtgtggagcgacttatgttccaatatatagggggcaaagagatgtaacctgcccc
tactgcactacacattttgttccatctcagcaaggacagctatgcactgtttgtgatctt
gcggcagtaggagctgatgcatctggcttgttttgttctccttcgcaaataagatga
DBGET
integrated database retrieval system
