Salvia hispanica (chia): 125218901
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Entry
125218901 CDS
T09851
Name
(RefSeq) exosome complex component RRP42-like isoform X1
KO
K12589
exosome complex component RRP42
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125218901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125218901
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
125218901
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
125218901
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
125218901
NCBI-ProteinID:
XP_047976654
LinkDB
All DBs
Position
4:complement(34662891..34666103)
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AA seq
319 aa
AA seq
DB search
MVGLSLGEKTFIKGGIDQDLRTDGRKRLTHRPIFVETGIIPQASGSARVKLGATDVIASV
KAELGKPNPSYPDKGKVSIYVDCSPTAEPSFEGRGGEELSTEFSSALERCLLGGKSGAGT
TYKHMMIRSAIYVRCINSYNNLWSPEFAPGAGIDLSSLCIVRGKVCWDLYIDGLVVSSDG
NVLDALAAAIKAALSNTAIPKVQVSANAPSDEQPEVDVSDEEFLQFDTSGVPVIVTLTKV
GRHYIVDATTEEESQMSSAVSVSINRQGRICGLTKRGGAGLHPTVILDMVSAAKHVSEQL
MNKLDSEIAAAEACDEMES
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggtggggctctcgctaggggagaaaacatttataaaaggtgggattgatcaggattta
cgtactgatggtaggaaacgactaacgcaccgacccatttttgttgaaactggtatcatt
cctcaggcaagtggctcagcaagagtgaagctcggggcaacagatgttattgctagtgta
aaggctgagcttggaaaaccaaatccatcatatcccgacaaaggaaaagtttccatatat
gttgactgcagtccgactgctgaaccatcttttgagggcagagggggtgaagaattatcc
acagagttttcttcagcacttgaaaggtgtttgttgggtggtaaaagtggtgcaggtacg
acttacaagcacatgatgattaggtccgcaatttatgttcgctgcataaatagttataac
aatttatggtctcccgaatttgctccaggtgctggaattgatctgtcatctctgtgcatt
gttcgagggaaggtctgttgggatctttacattgatggtcttgttgttagttcagatggt
aacgtgctggatgctttggccgctgccattaaggctgccctaagcaatacagctattcca
aaagttcaagtttctgccaacgctccctctgatgagcagccggaggttgatgtgagcgat
gaggagtttctacaatttgacacgtcaggggtccctgttatagtcactttaacaaaggtt
gggaggcattatattgtagatgcaactacggaagaggagtcccagatgagttcagctgtg
tcagtctcaatcaacaggcaagggcggatatgtggtctgacaaaaagagggggcgctggc
cttcatccaactgttatactcgatatggtatcggccgccaaacatgtaagtgagcagttg
atgaacaaattggattcagaaatagctgcggctgaggcttgcgatgagatggaatcttaa
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