Salvia hispanica (chia): 125218957
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Entry
125218957 CDS
T09851
Name
(RefSeq) uncharacterized protein LOC125218957 isoform X1
KO
K06100
symplekin
Organism
shis
Salvia hispanica (chia)
Pathway
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125218957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125218957
03019 Messenger RNA biogenesis [BR:
shis03019
]
125218957
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125218957
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
125218957
U7-dependent histone pre-mRNA processing factors
125218957
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
ASTN_1_2_N
Motif
Other DBs
NCBI-GeneID:
125218957
NCBI-ProteinID:
XP_047976736
LinkDB
All DBs
Position
4:complement(749759..764734)
Genome browser
AA seq
1336 aa
AA seq
DB search
MAAALARDQALSLLAAANNHGDLAVKLSSLKQAKDILFSIEPSQAAELFPYLAELQSSPE
TLVRKYLLEVIDEVGAKLSEHLCILFPVLLTFLKDNNPIVVKQSIITGTKVFSCVLEELA
LQHQRRDIVGRWLEELWTGLIKFRDTVLAIIFEAGPIAPKLLGIKFLETFILCFTLDSTE
FEMCNPEVMVRQGRMFNISWIAESHPILNPPALMSDANRYLGIFLEILLSANNLPGCLTI
TTVNSLVAIARKRPVYYKTVLKALLDFSPSVEMAKGRHTASIQYSLRTAFLGFLRCTHPF
MTESREKLLKELRAMNAGDAADQVTRQIDKIMRNNERASRDLQINKDDQLSNQLHISGDS
TKKRTAQFDHEDQNNIYDGSSKRLRHGPHTNTNAAADTNDARQDHVNGISAKPPVLDGGL
TPVEQMIAMIGALIAEGERGVESLEILISNIHADLLADIVITNMKHLPKNPPPLTKYGNL
SSKHHSDSSDPTHVVASNGLATSMQTLDHSAQLPASSLSTTNFAVSDTFASANLSTDSKR
DPRRVRFFLDPRRLDPRRLVVPVDVPPTSVLEDNVVQFPTVQSDFDPVSSSSALISVPQS
VPEIAPQPLMPTIQTDINLPDSPMTIEVDESIQNDEVLDFDANAITPDKDADYSVHMSPS
FSKAEDIVSHASMDVAMLDEAYSPSSEESDEPLPDISNAEASESGSAELPVLPLYIELDE
DHQIHVKRLALERIINKYQNSHRTDIKQTQIAVVARLFAQIDVSDVTEMVKKLIISDYEQ
QKGHELVLHILYHLHSLVISDSASSAAAAVYDNFLLAVAKSLLVDLPASNKSFSRLLGEV
PHIPDSILGMLDDMCTKSHSGTDGRDGDRVTQGLGAVWSLILSRPLIRQACLDIALKCTV
HPKDDIQAKAIRLVSNKLYAVSFISDSIEQFAKNMFFSAVDQHSSDLLLSESANSDRRIG
GQVGSAETSTSGSQVSEPGISPNETMKGVQDAPLDDSSNIFSQAHRLMSLFFALCAKKPI
LLQLVFDSYVRASKAVKQAVHRHMNVLMRALGSSYSELLHIISNPPQGSEDLLTQVLHLL
SEGRAPPTDLVVTVKHLYETRLKDASILIPIISAFSRDEVLPIFPRLVQLPLPKFQMALA
HILQGSAHTGPALTPVEVLVAIHDISPERDSLPLKKITDTCSACFEQRTVFTQQVLAKAL
NQMVDRTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVNKQVWRMPKLWVGFLKCISQT
QPHSFNVLLQMPSPQLESALSKYPNLRGPLTAFTNQSSIKTSVPRTTLLLLGLASEPHMQ
QPHAASYLQASDGPAH
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccctggcgagggaccaggcgctctccctgctcgccgccgccaacaaccat
ggcgatttggccgtcaagctgtcgtcattgaagcaggccaaagatatcttgttttctatt
gagccgtcgcaggcggcggagcttttcccttacttggccgagcttcagtcttcccccgaa
acgctagtcaggaaatatctccttgaggtaattgatgaggttggggccaaactaagcgaa
catctttgcatactatttcccgtcttattgacatttttgaaagataataatcccattgtt
gtaaagcaatctattatcactggcacaaaagttttctcttgcgtgctggaagagttggct
ttacagcatcaacggcgtgatatagttgggagatggcttgaagagctttggacagggctg
atcaaatttagggatactgttttggccattatctttgaggcagggcctattgctccaaag
ttgttagggataaagtttcttgaaacatttattttatgcttcacattggattcaactgag
tttgaaatgtgcaaccctgaagtaatggtgaggcaaggtaggatgtttaacatctcatgg
atagcggagagtcatcctattctgaatcctcctgccctcatgtctgacgcaaatagatat
ctagggatctttttggaaattttgctgtcagctaataatttacctggttgcttgacaatt
actactgttaatagtcttgtagctattgcaaggaaaaggcctgtctactacaaaactgtc
ttgaaggcactgcttgattttagtccaagtgtagagatggctaaaggccgccacacagcc
agcattcagtattctctgagaactgcatttctagggtttttaaggtgtacacatcctttc
atgaccgagtcaagagagaaattgcttaaagagttaagagcaatgaatgctggagatgct
gctgatcaagttacccgccaaatagataaaatcatgaggaacaatgaacgtgcttcacgt
gatcttcagatcaataaggatgatcagctgtcaaatcagttgcatatttcaggggattct
actaagaaaaggaccgctcaattcgaccatgaggatcagaataatatttatgatggctct
tcgaagaggctgcgtcatggtcctcataccaatacaaatgccgcagcggatactaatgat
gctaggcaggatcatgttaatggcatatctgctaagccccctgtgttggatggtggtcta
actcctgtggagcagatgattgctatgattggcgctttaattgccgaaggagaaagagga
gtggagtctctggaaattcttatatccaatatccatgccgatctacttgctgatatagtc
atcacaaatatgaagcacttgcccaagaatccacctcctttgacaaaatatggtaacttg
tcttcgaaacatcacagtgactcaagcgatcctacccatgtagttgcatcgaatggtttg
gcaacttctatgcagacgttagaccattcggctcaattacctgcttcatcattgagcacg
actaactttgctgtttcagatacatttgcttctgctaatctatctacagattctaaacgt
gatccacgaagggtaaggtttttcttggatcctcgtcgtcttgatccaagacggttggtg
gttcctgttgatgtgcctccaacatctgttttggaagataatgttgtccaatttccaact
gtacagtctgatttcgaccctgtcagctcctccagcgcactcatatcggtacctcaatct
gttcctgaaattgctcctcagcctctgatgcccacaattcaaactgacataaatcttcca
gactccccaatgacaattgaagtggacgagtctatccagaacgatgaagtccttgatttt
gatgccaacgcaatcactccagataaggatgcagattattctgtacatatgtcaccatct
tttagcaaagctgaggacattgtttctcatgcatcaatggatgtggccatgcttgatgag
gcctactcaccttcatcagaagaatctgatgaaccactgccagatatttcaaatgctgaa
gcatctgagagtggatctgctgagttgccagtgcttcccttgtacattgagctggatgaa
gatcatcaaatacatgtcaaaagactggcacttgaacggataattaacaagtaccagaat
tcacacagaacagatattaaacaaacacaaattgcagtggtggcccgactgttcgcacag
attgatgttagtgatgtgactgagatggtgaagaaactgattatatcagattatgaacag
caaaagggtcacgagcttgtgttgcatatcctataccatctccatagtcttgttatctca
gactctgcatcatctgctgctgctgctgtatatgacaatttccttctggcagtggcaaaa
tctttgctagttgatctaccagcatctaacaagtcttttagccgacttctcggtgaagtt
ccccacatacctgattccatattggggatgctagatgacatgtgtaccaaaagtcattct
ggaactgatggccgtgatggtgatcgtgtcactcagggccttggagcagtgtggagctta
attcttagtcgccctctcattcgccaagcatgtctagatatagctttgaagtgtactgtg
cacccaaaggacgatatccaggctaaagctatacgcctggtgtcaaacaaactctatgca
gttagctttatttctgacagcatcgagcaatttgctaagaacatgttcttctcagctgta
gatcagcattcttcagatttattactgtcagagtctgcaaattctgacagaagaattgga
ggacaggtaggaagtgcagaaacatccactagtggctctcaggtttctgagcctgggatt
tctccaaatgagactatgaaaggggttcaggatgcacccctagatgattcatcaaatata
ttttctcaagctcacaggctaatgtccttattttttgcactctgtgctaagaaaccaatt
cttcttcaactggtttttgacagttatgtccgtgcttcgaaggctgttaagcaggctgtc
catcgtcatatgaacgtcttgatgagggctctggggtcatcgtattcagaattacttcat
ataatatcaaatccaccccaaggaagtgaagatttgttgacacaggttcttcatttgtta
tccgaagggcgagcaccacctacagatttggtggtgactgttaaacatttatatgaaact
aggctgaaggatgcttctattcttattcctatcatatccgctttttctagagatgaggtt
ttacctattttccctcggcttgtccagctccctctacccaagtttcagatggcactggct
catatattacagggctctgctcatacaggtcctgcattaacgcctgttgaagtcttggtg
gcaatccatgacatttctcctgagagagatagtcttccactgaaaaagatcacggatact
tgctcagcttgttttgagcagcgcacggtttttacacagcaagtcctggctaaggcctta
aaccagatggttgaccgaactccacttccactgctcttcatgagaactgtaatccaagca
attgatgcttttccgacactggttgattttgtcatggaaatcttgtctaaactcgtcaac
aagcaggtttggagaatgccaaaactatgggttggcttcttgaaatgtatctctcaaaca
cagccacattccttcaacgtattgctccagatgccgtctcctcagcttgaaagcgctcta
agcaagtatccgaatcttcgtggtccacttactgcttttacaaaccagtcaagtattaaa
acctctgtgcctaggacaaccctattgcttcttggccttgcctctgaaccacacatgcag
caaccacacgctgcttcgtatctgcaggcctccgatggcccggctcattga
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integrated database retrieval system
