Salvia hispanica (chia): 125219027
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Entry
125219027 CDS
T09851
Name
(RefSeq) WD-40 repeat-containing protein MSI1-like
KO
K10752
histone-binding protein RBBP4
Organism
shis
Salvia hispanica (chia)
Pathway
shis03082
ATP-dependent chromatin remodeling
shis03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125219027
03083 Polycomb repressive complex
125219027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shis03036
]
125219027
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
125219027
Histone modification proteins
HAT complexes
HATB complex
125219027
HDAC complexes
Sin3A-HDAC complex
125219027
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
125219027
PRC2.2
125219027
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
125219027
Heterochromatin formation proteins
Other heterochromatin formation proteins
125219027
Chromatin remodeling factors
NuRD complex
125219027
NuRF complex
125219027
NuRF complex (fruit fly)
125219027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
WD40_RFWD3
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
eIF2A
MIOS_WD40
WD_LRWD1
Beta-prop_HPS5
Beta-prop_RIG_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
125219027
NCBI-ProteinID:
XP_047976826
LinkDB
All DBs
Position
4:complement(990471..993780)
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPPGKD
YSVQKMILGTHTSENEPNYLMLAQAQLPLEDAENDARQYDDERSEFGGFGSANGKVQIIQ
QINHDGEVNRARYMPQNSFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTE
GYGLSWSNFKQGHLLSGSDDAQICLWDINATPKNKALDAMQIFKIHEGVVEDVAWHLRHE
HLFGSVGDDQYLHIWDLRNPVMSKPVQSVVAHQSEVNCLAFNPFNEWVIATGSTDKTVKL
FDMRKLSTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPGDDA
PKPS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagacgaggacgaaatgcgcggtgaaatcgaggagcgcctgatcaacgaggag
tacaagatttggaagaagaacaccccgttcctctacgatctggtcatcacgcacgccctc
gagtggccctccctcaccgtcgagtggctgcccgaccgcgacgagccgccggggaaggac
tactccgtgcagaagatgatcctcggcacccacacctccgagaacgagcccaattacctg
atgctggcgcaggcgcagctgcccctcgaggatgccgagaatgacgctcgccagtacgac
gatgagcgctctgaattcggcggattcggcagcgctaatggcaaggtgcaaattatccag
caaattaatcatgatggcgaggtgaatcgtgctcgctatatgcctcagaactcatttatt
attgccaccaagactgttagtgcagaagtttatgtcttcgattatagcaagcacccatct
aagcctcccttggatggtgcgtgcaaccctgatttgaggcttaggggacatagtaccgag
ggatatggtttatcgtggagcaatttcaagcaaggccatttattgagtggttcagatgat
gcccaaatatgtttatgggatataaatgcaactccaaagaataaggctttagatgccatg
caaattttcaagattcacgaaggagtggttgaagatgtagcatggcatctgaggcacgaa
cacttgtttggatctgttggagacgatcagtatttgcacatatgggatctccgtaatcca
gtaatgagcaagcctgtacaatctgtagttgctcatcagagtgaggtaaactgcttagcc
ttcaatccgtttaacgagtgggttatagcaaccggatctactgacaagactgttaaatta
ttcgatatgagaaagctttctactgccctccacacctttgattgccacaaggaggaggta
ttccaggttggatggaatccgaagaacgagaccatcttagcttcttgctgtcttggtaga
agattaatggtctgggatctcagcaggattgacgaagaacaaacaccagaggacgcagag
gatgggccaccagagttgctattcatccacggtggccatacaagcaagatatcagacttc
tcgtggaacccgtgtgaggattgggttgttgctagtgtggctgaagataatatactacag
atttggcagatggcggagaacatctaccacgacgaagatgatctgcccggagacgacgct
cccaagccctcctag
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