Salvia hispanica (chia): 125219031
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Entry
125219031 CDS
T09851
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125219031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125219031
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125219031
Spliceosome [BR:
shis03041
]
Complex A
U2 snRNP components
U2 related factors
125219031
Complex B
125219031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
Motif
Other DBs
NCBI-GeneID:
125219031
NCBI-ProteinID:
XP_047976829
LinkDB
All DBs
Position
4:50469149..50473220
Genome browser
AA seq
1134 aa
AA seq
DB search
MEEPKSKSRRDGSETDEVKANHHREDRKREKERNGERHKDRDRDSRHEREKSVDDKYRDK
ENKREKERNGERHKNRERNRDRDNRHEREKSVDDKYRDKEKHKSKRHDKEQEQERGRSHD
DERPRDKAKGREREKEREKEREKERERERREKTRDRERERKERERKHEKEKRRDRDRSHS
SDDDVKDHERKRRKKEEDHQTRDSEQTSKANRHRDDSEDNSSRKKGNVDSEDKKEKSWEQ
DLAEEQQRLDDEMEKRRRRVQEWQELRRKKEESEIEKHGVPVTHEPESGKTWTLEGESDD
EEAGPQERETMDVDEDEDATMKPVAEDMSVDSANETAPSMQSVGDNAVDDEEIDPLDAFM
NSMVLPEVEKLNNIVPSASNDSGPELVEKNGKMNSENTKKGKNRYMGRIIPGDNSDSDYG
EVENEEDPSEEEDDEEFMKRVKKTKVEKLSIVDHSKIDYPPFRKNFYIEVKEISKMTSEE
VAAHRKQLELKIHGKDVPKPVKAWHHTGLATKILDTIKKLNYEKPMPIQAQALPVIMSGR
DCIGIAKTGSGKTLAFVLPMLRHIKDQPPLMSGDGPIGLIMAPTRELVQQIHSDIKKFTK
AFGLSCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE
ADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLNKPVELQVGGRSVVN
KDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHTQEKCDALFKDLLKSGYPCVSLH
GGKDQTDRESTLADFKSNVCNILIATSIAARGLDVKDLELVVNFDVPNHYEDYVHRVGRT
GRAGKKGCAITFISEEDARYGPDLVKALELSEQSVPEDLKALADGFMAKVNQGLEQAHGT
GYGGTGFKFNEEEDEARRAAKKAQAKEYGFEEDKSDSDDEDEGIRKAGGDISHQAALAQA
LASATKASAAASVTAPMASGQLIQNGGVAAAAVIPGGGLQTGGNDAAAKAAALAALMNLQ
HNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYYPPGK
IAGPGERKLYLFIEGPTEQSVKRAKADLKRVLEEITNQASSLPGSAQPGRYSVV
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaccgaaaagcaagtctagaagggatggctctgaaacagacgaagtgaaagca
aatcaccatagagaggatcgtaagcgtgaaaaagagaggaatggggagaggcacaaggac
agggaccgtgacagtcgccacgagagagagaagagtgttgatgacaagtacagggacaaa
gaaaataaacgtgaaaaggagcggaatggggagaggcacaagaacagggagaggaacaga
gatcgtgataatcgccacgagagagagaagagtgttgatgacaagtacagggacaaagaa
aaacacaagtctaagcgccatgacaaggaacaagaacaggagagaggaaggagccatgat
gatgagaggcccagggataaggctaaaggcagagagagggagaaagagagggagaaagag
agggagaaagagagggagagggagagaagggaaaagaccagggacagagagagagaaaga
aaagagagggagaggaaacatgaaaaggaaaaacgccgagacagggataggtcacacagt
agtgatgatgatgttaaggaccatgagaggaaaaggcgcaagaaagaggaggatcatcaa
actagggattcagaacaaactagtaaggccaaccggcatagggatgacagcgaagacaat
agttcacggaagaagggaaatgtagattcagaagataagaaggaaaagagttgggaacaa
gatttagctgaagagcaacagagattggatgatgagatggaaaaaaggagaagaagagtt
caggagtggcaagagctgagaaggaagaaggaggaatccgagatagaaaaacatggggtg
cctgttactcatgaacctgaatcgggaaagacttggacactggaaggggaatctgatgat
gaagaagctggtccgcaggaaagagaaacaatggatgttgacgaggacgaggatgcaact
atgaagcctgttgcggaggacatgtctgtagactctgcgaatgagacagctccatccatg
caaagtgttggagacaatgctgttgatgatgaagaaattgaccccttagatgcgtttatg
aattctatggttttgcctgaagttgagaaactaaacaatattgtgccgtctgcttcaaat
gactctggtcccgaattagttgaaaaaaatggtaaaatgaactccgagaacactaaaaag
gggaagaacagatatatgggcagaattattcctggagataactctgattcagactatgga
gaagttgaaaatgaggaagatccttcagaggaggaagatgatgaagagttcatgaaacgg
gtgaagaaaaccaaagtggagaagctttcaatagttgaccattcaaagattgattatccc
cccttccgtaagaatttctacattgaagtgaaagaaatttcaaagatgacttctgaagaa
gtggctgcacataggaaacaacttgaattgaagatacatggaaaggacgtgcctaaacca
gtcaaagcctggcaccatacaggattggctactaaaattttggatactattaagaagctc
aattatgagaagccaatgccaattcaagcgcaagccttgcccgtaattatgagtggtcgg
gactgcataggtattgcaaaaactggttccgggaaaaccttagcctttgtcctgcccatg
ctgcggcacattaaggatcagcctcctctaatgtcaggtgatgggcctatcgggcttatt
atggctccgacaagggagcttgtccagcaaatccatagtgatataaagaaattcacaaag
gctttcggcctcagctgtgtgcctgtatatggaggttctggggttgctcagcagattagt
gaactgaagcgaggggctgagattgttgtttgcaccccaggtagaatgattgatatatta
tgtactagtggtggtaaaattactaatctgcgtcgtgtcacttacttggtcatggacgag
gctgatcggatgtttgatatgggttttgagcctcaaataacaagaatagtccaaaataca
agacctgatcggcaaactgtgctattttctgctactttcccacgccaagttgagattttg
gctcgtaaagtattgaataaacctgttgaacttcaggtaggtggtaggagtgttgtgaac
aaggacattacccaactagttgaggttaggcctgagagtgataggttccttagactcttg
gaactacttggagaatggtatgagaaggggaagatactaatttttgtccatacacaagag
aagtgtgatgcactgtttaaggatttacttaaatctggatatccgtgtgtgtcacttcat
gggggaaaggatcaaacagatcgtgaatccacattagctgattttaagagtaatgtttgc
aatatattgattgccacaagtattgctgctagaggtttagatgtcaaagatcttgaacta
gtcgttaattttgatgtccctaaccattacgaagactatgtccatcgtgttggtagaact
ggccgagctggtaaaaaggggtgtgctatcacatttatctcagaggaagatgcgagatac
ggacctgatctagtgaaagccttagaattatccgaacagagtgtccccgaagacctcaag
gccttagctgatggcttcatggccaaggtgaatcaagggcttgagcaagcccatgggact
ggctacggtggtactggtttcaaatttaacgaagaggaggatgaagccagacgagccgca
aagaaagctcaggcgaaggagtatggttttgaggaggataaatcagattcggacgatgaa
gacgaagggattagaaaagcaggtggtgacatatctcaccaagctgcacttgctcaagct
ttggcttctgctaccaaagcaagtgctgctgcttcagtaacagcgcccatggcgtctggg
cagctcattcaaaatggtggcgttgcggcagctgctgtaatccctggaggtgggctgcag
acgggtggtaacgatgcagctgccaaagcagcagctctggcagcgctaatgaatctgcag
cataacttggcaaagattcaggcagacgcgatgcctgaacactatgaagcagagctggag
ataaatgacttccctcagaacgcccgttggaaggtgacacacaaggaaaccctgggtccg
atatcggaatggacgggagcagccatcacgactcgaggccagtactacccgccggggaag
attgcagggccgggagagaggaaactgtacttgtttattgagggcccgacggagcaatct
gtcaaaagggcaaaggcagatctcaagagggtcttggaggagatcacaaaccaagcttca
tcgcttccaggctcagcgcaacctggccgatactctgttgtctag
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