Salvia hispanica (chia): 125219684
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Entry
125219684 CDS
T09851
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125219684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125219684
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125219684
mRNA degradation factors
5'-3' decay
Decapping complex
125219684
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
125219684
NCBI-ProteinID:
XP_047977685
LinkDB
All DBs
Position
4:complement(2065498..2072005)
Genome browser
AA seq
809 aa
AA seq
DB search
MDGYEGSGSVSDSSKLQDLKPFGSAPTGGALFDASQYAFFGNDVVDEVELGGLEDEEDDV
APVAFEEEDFIFEGEQGGGLGSLAEISDLSNTFSKLNNVVSGPKSAGVRPDWDPRETGSS
AVEWVQGPDNTNWLDRRNFNVETTHETGQLSSQPYSSFRIMESKSLHRTSSYPEQQQQQQ
QHPYEPQNLHHNYSSEPNLIQKPPFTSYPPPGQSNHPNHANHSSGHQLPISSSNPSPYNN
TQHQLTGLSPGAQFGGNLPQLPHDLPVNGRLQNQWANQNSYPGDRPLLPGNVATQQLSHP
NGLMRSQLMPPQHAQQIRSQHPFPPSYGHPSGLQSQLFNTRLSSSPPMLNNFDVHGFPDL
RDQRAMLMPRGRQGMRYPHQGPDFGNQRGNTSWPRFKSKHMSADELENILRVQLAATHSN
DPYIEDYYYQACLARKSAGAKLRHHFCPTNLVDGSSRARASDEPHAFLKVDALGRVNFSS
IRRPRPLLEVDSQLSSGAGGETKPVEKPLEQEPMLAARVTIEDGICLLLDIDDIDRFMQF
NQLPDGGAQLKQRKQILLEEIASSFHLIDPLGNNGNAVNLSSKDDLVFLRLVSLPKGRKL
LLRYLQLLFPGDLARAVCMAIFRNLRFFFGNLSPDPGASMTTENLVKTISACIHGMELKA
LAACLASVVCSAEHPPLRPVGSPAGDGASVLLKSVLERATELMTNPHAADSCSISNRAFW
QASFDAFFSLLTKYCFNKYDSIVQSFLSQGSPDTVAIGADVAKAISREMPVDLLRASLPH
TSDQQRKLLLEFVKRSMPVGGLSGGSGSS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggatggatacgaaggcagcggcagtgttagcgattcatccaagcttcaggatcttaaa
ccttttggctcagccccaacagggggtgcactgtttgatgcgtcacaatatgcatttttt
ggcaatgatgttgtggatgaagttgagttagggggactagaagatgaagaagatgatgtt
gctccagttgcgtttgaggaagaggactttatatttgagggggaacagggaggtgggttg
ggatctctggctgaaattagtgatctttcaaatacattttcgaagttgaacaatgttgtc
agtgggccaaaaagtgcaggagttcgtccagactgggatcccagagaaacaggttcctct
gctgttgagtgggtgcaagggccagacaacactaactggctcgatcggcgtaactttaat
gttgaaaccactcatgaaacgggtcaattgtcctcacaaccttattcctctttccggatc
atggaatccaagtcattgcacagaacatcatcataccctgaacagcagcaacagcagcag
cagcacccatatgaaccacaaaatctacatcataactattccagcgaaccgaatcttatt
caaaaaccaccatttacttcatatccaccacctggtcagtccaaccatcctaatcatgcg
aaccactctagtggccaccaattgcctatttcttcatccaatccttcaccatacaataat
actcagcatcaattgactggcttgtctcctggggcccaatttggtggaaacttacctcag
ttacctcatgatttgcctgtcaatggtcgacttcagaaccaatgggcgaatcagaatagt
tatcctggtgatcgtcctctcctcccgggcaatgttgctactcagcagctatcccatcca
aatggcttaatgcgctcacagttgatgcctccccagcatgctcagcaaatcagaagtcag
catccatttccaccatcatatggtcatccatcagggttgcagtctcaactattcaatacc
cggctttcttcttcaccacctatgctgaacaactttgacgtacatgggttccctgatttg
agagatcaaagagctatgctgatgccgagaggtagacaaggaatgcgctatcctcatcag
ggcccagattttggtaaccagaggggtaatactagctggccgaggtttaagtcgaagcac
atgagtgcagatgaactcgagaatattctcagagtacagcttgctgctacccatagcaat
gatccatatattgaagattactattatcaagcttgtctagctagaaaatctgccggtgct
aaactgaggcaccatttttgcccaactaatttggtggatggttcttcgagggcccgtgca
agtgatgagccacatgcttttctcaaggttgatgctcttggaagggttaatttctcctca
atacgcaggcctcgcccacttctagaagttgactcccaattatcaagtggggctggtggt
gaaacaaaaccagttgagaagcctttggagcaggagcctatgcttgcagctagggtgact
attgaagatggcatttgcctactacttgatattgatgatattgacaggtttatgcagttt
aatcagttaccagatggtggggcgcagctgaaacaaaggaagcaaattctgcttgaggaa
attgcatcatcattccatctgattgacccacttgggaataatggcaatgctgtgaatttg
tcatccaaggatgaccttgttttcttgagattagtttctcttccaaagggtaggaagctt
cttttaaggtatcttcaacttctttttcccggcgatcttgctcgagctgtctgtatggcc
atattccgaaatttgaggttcttttttggaaatctttctcctgatcctggtgcatccatg
acaactgaaaaccttgtgaagactatatctgcttgtatccatggtatggagctcaaagca
cttgcagcctgtcttgcatcagtggtctgttcagctgagcatcctcctttgcgtccagta
gggagtcctgctggagatggggcttcggtccttcttaaatctgttcttgagagggcaact
gagcttatgacgaacccccatgctgctgatagttgcagcatttctaacagggctttctgg
caggcctcttttgatgcgttcttcagccttcttacaaagtactgtttcaataaatatgac
tctattgtgcaatccttcctcagccagggctcaccagacacagttgccattggggctgat
gtagccaaagcaattagcagagaaatgccagttgatctcttacgtgcaagcctcccccac
acaagcgaccagcagagaaaactgctactggaatttgtgaagcggtctatgcctgtgggt
ggtctgagtggaggaagtggtagctcatga
DBGET
integrated database retrieval system
