KEGG   Salvia hispanica (chia): 125219724
Entry
125219724         CDS       T09851                                 
Name
(RefSeq) splicing factor U2af small subunit B-like
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
shis  Salvia hispanica (chia)
Pathway
shis03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125219724
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:shis03041]
    125219724
Spliceosome [BR:shis03041]
 Complex A
  U2 snRNP components
   U2 related factors
    125219724
 Complex B
    125219724
SSDB
Motif
Pfam: zf-CCCH RRM_1 zf_CCCH_4 Torus zf-CCCH_4
Other DBs
NCBI-GeneID: 125219724
NCBI-ProteinID: XP_047977726
LinkDB
Position
4:49136457..49139813
AA seq 318 aa
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
GVDAQGQPIDPKKMQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREED
HAANALNNLTGRFYAGRPIIVDFSPVTDFREATCRQYEEDACNRGGYCNFMHLKRISREL
RHQLFRKRRSRRSRSRSRSPYRHRSYDDRSHGSRSHSRTHDDHDHHGSRSRRRNSTSPRS
RRGRSRSPGGRRNRSPAREGSEERRAKIAQWNREKEEAEHVNSKASAGGEDQRSENDDSH
IVDNEGNDVRRQQNAYGY
NT seq 957 nt   +upstreamnt  +downstreamnt
atggcggagcacttggcgtcaatttttggtacagagaaggacagggttaactgccccttc
tacttcaaaatcggcgcctgcaggcacggcgaccgctgttcccgcctccacacaaagccc
agcatcagcccaacgcttctgctttccaatatgtaccagcgccccgacatgattactccc
ggcgtcgacgctcagggccagcccatcgatcccaaaaagatgcaggaacacttcgaggac
ttttatgaagatctgtttgaggagctaaacaaatacggggagattgaaagcttaaatatt
tgtgacaatctagccgatcatatggttggcaatgtttatgtccaatttagggaggaagat
catgctgctaatgctcttaacaacctgactggacggttctatgcaggacgccccattatt
gttgatttctctccagtgactgattttcgggaagctacctgtaggcagtatgaggaggat
gcatgcaaccgtggtggctactgtaacttcatgcatctgaaaaggattagcagggaattg
aggcaccaattatttcggaagcgtaggagtagacgcagccgtagcaggagcaggagtccc
tatcggcaccgtagttatgatgaccgctcacatgggagtcggagtcacagcagaacgcat
gatgaccatgatcaccatggaagtcgaagcaggaggcgcaatagcacaagtccaagaagt
aggaggggtagaagccgaagtccaggtggcaggaggaatcgtagtcctgcaagggaagga
agtgaagagaggcgcgctaaaattgcacagtggaatagggagaaggaagaagcagaacat
gttaacagcaaggcaagtgctggcggtgaggatcaaagatctgaaaatgacgactcccac
attgtggacaatgaaggaaacgatgtgcgaaggcagcagaatgcatatgggtactga

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