KEGG   Salvia hispanica (chia): 125220041
Entry
125220041         CDS       T09851                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
shis  Salvia hispanica (chia)
Pathway
shis03018  RNA degradation
shis03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125220041
  09123 Folding, sorting and degradation
   03018 RNA degradation
    125220041
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shis03019]
    125220041
   03041 Spliceosome [BR:shis03041]
    125220041
Messenger RNA biogenesis [BR:shis03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     125220041
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     125220041
Spliceosome [BR:shis03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    125220041
 Complex C
  U2 snRNP components
    125220041
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C
Other DBs
NCBI-GeneID: 125220041
NCBI-ProteinID: XP_047978111
LinkDB
Position
4:25990400..25992183
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDVELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgttcttctcgtatttcaaggatttggtggggagggaagtgacggtggaattgaag
aatgatttagcgattagagggactctgcattcggtggatcagtacctcaacattaagctg
gagaatactagggttgttgatcaggacaagtatccccatatgctttcagtgcgaaactgc
ttcatccggggatctgtggtccgatacgtccaattgccgcctgagggagttgatgtggag
cttctgcatgatgcgactagaagagaagcacgcggcggctag

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