Salvia hispanica (chia): 125220041
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Entry
125220041 CDS
T09851
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125220041
09123 Folding, sorting and degradation
03018 RNA degradation
125220041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125220041
03041 Spliceosome [BR:
shis03041
]
125220041
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125220041
mRNA degradation factors
5'-3' decay
Lsm complex
125220041
Spliceosome [BR:
shis03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125220041
Complex C
U2 snRNP components
125220041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
Motif
Other DBs
NCBI-GeneID:
125220041
NCBI-ProteinID:
XP_047978111
LinkDB
All DBs
Position
4:25990400..25992183
Genome browser
AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDVELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcttctcgtatttcaaggatttggtggggagggaagtgacggtggaattgaag
aatgatttagcgattagagggactctgcattcggtggatcagtacctcaacattaagctg
gagaatactagggttgttgatcaggacaagtatccccatatgctttcagtgcgaaactgc
ttcatccggggatctgtggtccgatacgtccaattgccgcctgagggagttgatgtggag
cttctgcatgatgcgactagaagagaagcacgcggcggctag
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