KEGG   Salvia hispanica (chia): 125220367
Entry
125220367         CDS       T09851                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
shis  Salvia hispanica (chia)
Pathway
shis03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125220367
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:shis03041]
    125220367
Spliceosome [BR:shis03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    125220367
 Complex C
   U5 SnRNP specific factors
    125220367
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_EML NBCH_WD40 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 ANAPC4_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_WDR19_1st eIF2A Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_RIG_1st Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 125220367
NCBI-ProteinID: XP_047978493
LinkDB
Position
4:14433338..14435433
AA seq 341 aa
MQVESALSVVGPKPTELSTFTHSFGPPGAGPNGKQRTSSLEAPIMLLAGHQSAVYSMKFN
PAGTVIASGSHDRDIFLWNVHGDCKNFMVLRGHKNAVLDVQWNTDGSQIISTSPDKTLRA
WDVETGKQIKKMVGHLFVVNSCCPARRGPPLIVSGSDDGTAKLWDMRQRGSIQSFPDKYQ
ITAVSFSDASDKIYTGGIDNDVKVWDLRRTDPVMKLQGHQDMITGMQLSPDGSYLLTNSM
DCSLRIWDMRPYAPQNRCVKILEGHQHNFEKNLLRCSWSPDGSKVTAGSSDCMVYVWDTT
SRRILYKLPGHTGSVNECVFHPNEPIIGSCSSDKQIYLGEI
NT seq 1026 nt   +upstreamnt  +downstreamnt
atgcaagtcgaaagtgctctatccgtggttggtccaaagccaacagagttgtctactttc
acacacagcttcgggccacctggggcaggacccaatgggaaacagcggacgtcaagctta
gaagcacctattatgttgctggctgggcatcagagtgcagtctactcaatgaagtttaac
cctgctgggactgtcattgcatctggttcgcatgacagggatatctttctgtggaatgtg
catggtgattgcaaaaactttatggtcttgagagggcacaagaatgctgtgttggatgtt
cagtggaatactgatggttcgcagataatatcaacaagtcctgataaaactttaagggca
tgggacgtggagacaggaaaacagattaagaagatggtagggcacttgtttgttgtgaac
tcttgctgtcctgctcggagggggccacctcttattgtgagtgggtcagatgatggaact
gcaaaactttgggacatgcgtcaaaggggttccattcagagttttccagacaaataccag
attacagcggtcagtttctctgatgcatcagataagatttacactggtggcattgacaat
gatgttaaggtttgggatttacgaagaactgatcctgttatgaagcttcaaggacatcaa
gatatgattactggtatgcagctcagtccagacggctcttaccttctcacaaacagcatg
gactgctctcttcgaatatgggatatgcgaccatatgccccccaaaatcgctgtgtgaag
attcttgaagggcatcaacacaattttgagaagaacctgctgaggtgtagctggtcgcct
gatggaagcaaagtcactgctggtagtagcgactgcatggtttacgtatgggacactact
tcaagacgcatattatacaagcttccaggccatactgggtcagtgaatgaatgtgtcttt
catcccaatgaacctataatcgggtcttgcagcagcgacaagcagatatatcttggtgaa
atttag

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