Salvia hispanica (chia): 125220771
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Entry
125220771 CDS
T09851
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
shis
Salvia hispanica (chia)
Pathway
shis03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125220771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125220771
03036 Chromosome and associated proteins [BR:
shis03036
]
125220771
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125220771
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125220771
PBAF complex
125220771
GBAF(ncBAF) complex
125220771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
125220771
NCBI-ProteinID:
XP_047978869
LinkDB
All DBs
Position
4:complement(25505879..25508132)
Genome browser
AA seq
541 aa
AA seq
DB search
MAANNNNLQKNIGGSSPFGNSMPVNPSLQQQLGSGFPGQFQFSEAQAQALAQAQAQSKAQ
AQAHAHAQMMAAHAQLQAQLQAAQGLSFNQGHPGGMANLGSQSPSLSGAGSMGLGVKRFP
QKPPVRPPSFVTSNVASPMRPMDASAAARRKKQKLPEKQLHERVAAILPESALYTQLLEF
ESRVDAALTRKKIDIQDALKTPTYLQKTLRIYVFNTFANQIRTIPKKPNAEPPTWTLKII
GRILEEGMDADQAAMMQKSNPSYPKFSAFFKRVTITLDQKIYPDNHLIIWDSTRAPAPHE
GFEVKRKGEQEFTASIRLEMNYMPEKFKLSAALTELLGIEVDTRARIMAAVWHYVKARKL
QCPDDPSSFNCDPPLQRVFGEGKVKFTSVTQKITPHLFPPQPIHLEHRIKLSGNSPVGTA
CYDVLVDVPFPIQRELNALLANTEKTKEIDACDEAICAAIRKIHEHRRRRAFFLGFSQSP
VEFINALVDSQNKDLKLVSGEGSRNAEKERNSDFYNQPWYDLCLHLYIHLNILVFLIILS
L
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgaataacaacaatcttcaaaagaacattgggggttcgtccccttttgggaat
tctatgcctgtgaatccatcactacagcagcaactggggtctggattcccgggccagttt
cagttttcagaagctcaggcgcaagcgcttgcccaggcccaggctcagtcgaaggcacaa
gcgcaagctcatgcccatgctcaaatgatggcagctcatgcacaactacaagctcagttg
caagctgctcaggggctttcgtttaaccagggtcatcccggaggaatggcaaacttgggt
tcgcagtctccttctctttcaggagctggaagcatgggattgggagtcaaacgcttccca
caaaaaccacctgttcgtccaccaagctttgtgacatctaatgtggcctctccaatgcgg
ccaatggatgcctcggctgctgctcgtaggaaaaagcagaagctcccagagaaacagtta
catgaaagagtcgcagctattttgcctgagtcagctctctacactcagctccttgagttt
gagtctcgagtggatgctgccttgacaaggaagaaaattgatatccaagatgccctaaag
actccaacttaccttcagaaaactctgcgtatttatgtcttcaacacttttgccaatcag
attcgcaccattcctaagaaaccaaatgccgagccacctacatggactcttaagattata
gggaggattttggaggagggaatggatgctgatcaggcagcaatgatgcagaaatctaac
ccctcgtatccaaagttctccgcatttttcaagagagttaccatcaccctcgaccagaaa
atataccctgataaccatttaattatatgggacagtactcgagcaccagctcctcatgaa
ggttttgaggtcaagaggaaaggagaacaagaatttactgcaagcataagactagaaatg
aattatatgcctgagaagtttaaactttcagcagctttgacagagcttttaggtattgag
gttgatactcgtgccagaattatggctgcggtatggcattatgttaaggctcgaaaattg
cagtgcccagatgacccttcttctttcaactgtgatccaccacttcaaagagtatttggg
gaaggcaaagtcaagttcacgtcagtcacacaaaaaattacgccccacctgtttcctcca
cagcccattcacctggaacataggataaagctttcaggaaatagtcctgtaggaactgca
tgttatgatgtattggttgatgttcccttcccgatacagagagaattgaatgctttgttg
gccaacactgaaaagacaaaagagatagatgcctgtgacgaagcaatttgtgctgcaata
agaaagatccatgagcaccggaggagaagggcattctttcttggatttagtcagtcgcct
gtagagtttataaatgcacttgtagattctcaaaacaaggatctgaagcttgtttctgga
gaaggtagtcgcaatgcagaaaaagagcgcaattcagatttttacaaccagccatggtat
gatttatgtttacatttatacattcacttgaacatcttggtgtttttgataatattatct
ctttga
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