Salvia hispanica (chia): 125220983
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Entry
125220983 CDS
T09851
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125220983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125220983
Enzymes [BR:
shis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125220983
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125220983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
125220983
NCBI-ProteinID:
XP_047979073
LinkDB
All DBs
Position
1:35421140..35427734
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AA seq
614 aa
AA seq
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MYFGRYFCSQTAAGHRRRYQRPVKQVIKSNFSETLAEIKESIFSSDFVAVSLQKTGSYSA
PWQKCLPIDTEETAYLKAKRAAERFQILQFSVCPFSVKASKLIANPYNFQLFPRHEVKAG
MPSYVFSCQSSSLASMAQEGFDFNACIYNGISYMSRAQESAATVQTRSVLLNGGGLLSTS
ALSVADVIFSERIKTRVKNWMNGCNNQHKTEVADYLISSLRKLVERSENYGSRPSLTIDV
CSERQVQLTSEALKEFVNIVLVRPPAKAGVEAVQVVLTCSEEDKNLLVKEIQDLEEEQRR
LVSGFREVIDLISTSQRPVVVHNSLNDFAFIHEKFLAPLPPTTNEFSSSLLSVFPHILDV
NHLMKELGLFDKMNNLSSAISYLDSRFSASVDMEVSYEAEKTDCVDVHRHSVMKVCQLFV
KLCSILKISLEIPEGGHTHLPALLQCSSNMFCSSDVRDPCNDDVRIWTSKSRTVSLRNLV
FLWGFRKGMSAQDLKDVLCNSHDVFSEEFDVKMVDRKCAIVVFWTPGFSKSFLGIMDSGE
RFSNKLENMIFEGLKAADYETYRRVCKSDLWKPDLAECLAQATDETKVFSGAKMQQEKSV
ICWNNDEMINLDEL
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtatttcggacgctatttctgctcgcaaacagccgccggccaccgccgccgctaccaa
cggccggtgaagcaagtgattaaatctaacttctccgagactttagctgaaatcaaggaa
agcatcttcagctccgatttcgtagcggtttcgttgcagaagaccggcagctactccgcg
ccgtggcaaaaatgcctcccgattgacacggaggagaccgcttatttgaaggccaagcgc
gccgctgagcgatttcagattctacagttctcggtttgccctttctcggtcaaagcttct
aagctcatcgccaatccgtataacttccagttgtttccgaggcatgaggtgaaagctggg
atgccatcttatgttttttcatgccaatcatcgagtttggcctctatggcgcaagaaggt
tttgatttcaatgcttgcatatacaatggcatatcatacatgtctagagcacaagaatca
gctgcaacagttcaaactcgaagtgtattactgaacggtggcggtttgctatctacttca
gccttgtcagttgcagatgttatattttctgaaaggatcaaaactcgagttaagaactgg
atgaatggttgtaacaatcaacataaaactgaggttgcagattatctgataagttcattg
aggaaactagtagaaagatctgaaaactatggttccagaccatccttgaccatagatgtc
tgcagtgaacgccaggtgcagcttacatcggaggcgttgaaagagtttgttaatattgta
ctagtacgtcctccggcaaaagcaggggtagaggctgttcaagttgttttgacgtgttca
gaagaagataagaatcttcttgtgaaagaaattcaagatctggaagaggagcagagaagg
cttgttagtggctttcgagaggtgatagacttgatttctacttctcagaggccggttgtt
gtgcacaactcacttaacgattttgctttcatacatgaaaagttccttgctccacttcct
ccaactacaaatgaattctcgagttctttgctttcggtttttcctcatatactcgatgtc
aaccatcttatgaaagaacttggattatttgataaaatgaataacttgtcatcagccatt
tcctatctggatagtaggttctctgcgtcagtagatatggaagtttcttatgaagcggag
aagacagactgtgtcgatgttcataggcatagtgttatgaaagtatgccagttgtttgtt
aaattgtgctctatactgaaaatctctttagagattcctgaaggaggtcatacccatttg
cctgctttacttcaatgcagttccaatatgttttgttcaagtgatgttagagatccttgc
aatgatgacgtgagaatttggacatccaaaagtagaacggttagcttaagaaatttggta
ttcttgtgggggtttagaaagggaatgtcggcccaagatctgaaagacgttctgtgtaat
tcacatgatgttttctcggaagaatttgatgttaagatggtggataggaaatgtgctata
gttgttttctggactcctggtttctcaaaaagttttcttgggataatggattctggagaa
cgattctctaataagctggaaaatatgatattcgaaggcctgaaagctgcagattacgag
acatatagaagagtttgcaaatctgatttgtggaaaccagatctagcagagtgcttggcc
caagccacagatgaaaccaaagtattttctggagccaagatgcagcaggagaaatcagta
atatgctggaataatgatgagatgattaatctggatgaactttaa
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