Salvia hispanica (chia): 125221199
Help
Entry
125221199 CDS
T09851
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 14
KO
K05391
cyclic nucleotide gated channel, plant
Organism
shis
Salvia hispanica (chia)
Pathway
shis04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
125221199
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
shis04040
]
125221199
Ion channels [BR:
shis04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
125221199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_1
O-FucT
Ion_trans
cNMP_binding
DUF4231
Motif
Other DBs
NCBI-GeneID:
125221199
NCBI-ProteinID:
XP_047979281
LinkDB
All DBs
Position
4:45625587..45630221
Genome browser
AA seq
1053 aa
AA seq
DB search
MSSNCTIDHLLNRDKIGEEEVLLNIEEEDGIVKTYNLTNFECVKEAELVDDMFVIHHFLE
YLKEDVTIVNIPTYALARFYSDNIFPRFKEKQIMAWITFVYRLGYDTVPQDTHMLRCRVN
CNILKFLPETENMFDLNRLGNSKYFLVLQLWVEEGMVDLSLCDFVGTGMEIVLMVIYRFN
DWPRGFSYAFHLWAGSLQKQMDRLCPLKPGEIEIMRRAVGYPKDTRIYVASGHVYTLYEH
SFMFTFVDLYVKVTALHSNPSREVFNAKRPPLTVKETEDDETRERETVEVKESIWTMKDK
SMQVCVEGDETPPQNFEFSPVCSGYTLIPIELVDPIAEDYLGDEVSSRIKGKLDMEKAYD
RMQWPFLLNVLKRMGFSDKWIQLIDHCISPCWFSVLINGCPAGFFKSTRGLRQGDPISPT
LFILAAEYLSKLLDQLILGKKEMMYRTARYTMGVSHLAYADDIIVFSQAQRSAVLSISDC
LEHYMNVSGQKVNVGKSCFFLDERHNTWATEISELSICFSFIQIVIWSILPAIRSSHADH
TNNALVLIVLLQYIPRLYLIFPLSSEIIKANGLVTKTAWAGAAYNLVLYMLASHVLGASW
YLLSIERHATCLKSACRDEFNGIGCSLPFLDCGTLTHNDRGRWVNSTQVFKKCNPDDTTY
FKYGIFGNAIANSVVSSGFREKYFYCLWWGLQNLSSYGQTLSTSTFIGETMFAILIAILG
LVLFAHLIGNMQTYLQSMTVRLEEWRLRRRDTEEWMRHRQLPEALQQRVRRFIQYKWLTT
RGVDEESILHALPIDLRRDIKRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTY
IVREGDPVSEMLFIIRGVLESSTTNGGRTGFFNSTTLRPGDFCGEELLAWALLPRSTLNF
PSSTRTVRALNEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFRYYSHHWRTWAACFIQAA
WRRCKKRMMAKNLSVSESFCFSHDVQSSEEHDGEEEDVQAAAAADNSCQVQQNPASRFAA
NTKRGAQKANDLEMHKLQKPEEPDFSADADVDE
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcaattgtacaattgatcatttacttaatcgagataaaattggggaggaagag
gtattgttaaacattgaagaggaggatgggattgtaaaaacttataatctaaccaacttc
gagtgtgtcaaggaagcagagttggtcgacgacatgtttgtaattcatcattttcttgaa
tacttgaaagaagatgttacaatagtaaacattcctacatatgctcttgctcggttctac
agtgacaatatttttcctcggttcaaagaaaaacagataatggcctggattacttttgtt
tatcgacttgggtatgatactgttcctcaagatacccatatgttaaggtgcagagtgaat
tgtaatattttgaagtttcttcctgaaactgaaaatatgtttgatttaaatcggttgggc
aattctaagtatttcctggttcttcaattatgggttgaggaaggcatggtggatctttct
ttatgtgattttgtgggaactggaatggagatagttctgatggttatatacagatttaac
gattggcctcggggcttctcgtatgccttccatctttgggcagggtctcttcagaaacaa
atggatagactttgccctctcaaacccggtgagatagagatcatgcgtcgtgctgtgggc
tatcctaaagacacacgaatatacgtggcttctgggcatgtctatactttgtatgaacac
tcatttatgtttacgtttgttgatctttatgttaaggtgactgcactgcactctaatccc
tcacgggaagtattcaatgccaagagaccgccattaactgtgaaagaaacggaagatgat
gagacgagagagagggaaacggtcgaggtaaaagagtcgatctggaccatgaaggataag
tctatgcaggtgtgtgttgaaggagatgaaaccccacctcagaattttgagtttagcccg
gtttgcagtggttacactttgattccaattgaattggttgacccaatagcggaggattat
cttggagatgaggtaagctcaaggatcaagggcaagttggatatggaaaaggcttatgat
cggatgcaatggccttttcttctcaatgttttgaaaaggatgggtttctctgacaagtgg
atacaacttattgaccattgtatatcgccttgctggttttctgtgttgattaatggatgc
ccagcaggtttttttaagtcgactcggggtctaagacaaggtgaccctatttcccctact
ctgttcattcttgcggcagaatatttgtcaaagttgttggatcaactcattcttggaaag
aaagaaatgatgtatcgcacggctaggtacaccatgggggtctcgcacttagcttatgcg
gatgacattattgtcttctcacaggcacagagatctgctgtgttgagcatctcggattgt
cttgagcattacatgaatgtgtcgggacagaaagtaaatgtggggaaaagctgcttcttc
cttgatgagaggcataacacatgggcaacggagattagtgagctaagtatttgcttctca
tttattcagatagtcatatggtccatattaccagcaatcagaagctcgcatgctgatcat
acaaacaatgcccttgtgcttattgttttgctgcaatacatcccccggttgtatctcatc
ttcccgttgagttctgagatcatcaaagctaatggactcgtcacaaagacagcatgggca
ggagctgcttacaatctggtgctctacatgttagcaagccatgtgttaggggcttcctgg
tacttgctgtcgattgagagacacgcaacgtgtttaaaatctgcttgcagggatgagttc
aacggcattggctgctcactcccttttctcgattgtggcactttgacccataatgacaga
ggaagatgggtaaacagcacacaggtgttcaagaaatgcaatcctgatgacaccacctat
tttaagtatggaatatttggaaacgccattgcaaacagcgttgtgtcgtctggatttcga
gagaagtacttctactgtttatggtggggtttgcaaaacttaagttcctatggccagacg
ttgtctacaagcacgtttattggagagactatgttcgccatactcatcgccatcttgggg
cttgttctatttgctcatttgattggaaatatgcagacctatctgcaatctatgactgtg
aggcttgaggagtggaggctcaggcgtcgagacactgaggaatggatgaggcatcgccaa
ctcccggaggctctccaacagcgtgtgagacgttttatacagtacaaatggcttaccaca
agaggagttgatgaagaatcgatcctccatgccttgccaatagatctccgtcgtgatatt
aagcgccacctctgtctagaccttgttcgtcgtgtcccgtttttctcccaaatggacgat
cagcttcttgatgccatctgtgagcgtctcgtctcatccttgagcacccaaggcacctac
attgtccgcgagggagatcccgtctcggagatgctcttcatcattaggggggtgctggag
agctcgaccacaaatggaggccggacaggattcttcaactcgacaaccttgaggccgggt
gacttctgcggcgaggagctgctcgcgtgggcgctgctccctaggtccaccctaaacttc
ccttcctcgacacgaacagtgagagcactcaatgaagtggaagcattcgtgctgagagca
gaagaccttaaattcgttgccaatcagttcagacgtctccacagtaagaaactgcagcac
acttttagatactactctcaccattggaggacgtgggctgcctgcttcattcaggctgcg
tggcgtcgctgcaagaagagaatgatggctaaaaacctcagcgtgagtgaatcgttctgt
ttctcacacgacgtgcagtcatcagaagaacatgatggtgaagaggaagatgtacaggcg
gcagcagcagcagataattcttgtcaggtgcaacaaaaccctgcatcaaggtttgcagct
aacacgaagaggggagctcagaaggccaacgatttggaaatgcataagctgcagaagcct
gaagagccggatttctcagctgacgctgatgttgatgagtga
DBGET
integrated database retrieval system
