Salvia hispanica (chia): 125221635
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Entry
125221635 CDS
T09851
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial isoform X1
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shis03016
]
125221635
Enzymes [BR:
shis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
125221635
Transfer RNA biogenesis [BR:
shis03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
125221635
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GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Bromo_TP_like
Motif
Other DBs
NCBI-GeneID:
125221635
NCBI-ProteinID:
XP_047979769
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Position
4:complement(35852091..35859267)
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AA seq
791 aa
AA seq
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MAVRLVNGFRCCTVTPSPTALRCCLRHHNHLHFHSSTCFSISRRIRCRRISFGYEVVRRY
SAQSLVDMVMEELDSIRKRGIARASNKLGLGTSDQLIESKPGKKTLEKGLLLEFKKDSER
VLLAVVQKPDGKKNWMVSDQNGAMASIKPQQITFIVPGIKDFDHMEIPNFIQKAQDNLDP
ALLEFAWIELVEKNKSITVEELAEMMFGSAEPLESYSAHLLLSKDDIYFTTMETKGSYSV
YGPRPAVQVEELMRRKLVKEAAERELEEFVNLLRSARDALFHEKPPKSMWSSEEKNQTKI
EILQAYAIDDCRNEDEKKTAGMILKAIGFPKTASAAMNLLIDIGYFPVHVNLDILKLNIH
TDYAEEILMAAERLLLESPDQDEVERKDLTHLKVYAIDVDEADELDDALSATRLQDGRIK
IWIHVADPTRLVQPGSIIDKEAMKRSTSVFLPSATYPMFPEKLAMEGMSLKQGKHCKAVT
VSVVLHGDGGIAEYSVENSFIKPTYMLTYESATELLHLNLEEEAELRLLSEAATLRFQWR
RRQGAIDASTLEARIKVTNPDDPEPLIKLYVENQADPAMRLVSEMMILCGEVMATFGSVN
KIALPYRGQPQSNIDISDFAHLPEGPVRSSAIVKTMRAAEFDFRKPTRHGVLGLPGYVQF
TSPIRRYMDLLAHYQVKAFLRGDSPPFSAGQLEGMASMVNMNIRLVRRLSSSSLRYWMIE
YLRRQPKEKKFSALVLRFIKDRVAAILLMEVGIQGSAWVSLGVQVGDEVKVVVEEAHPRD
DVLIFKEAQAI
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcgcctcgtcaacggattccgctgctgcacagtcacaccgtcgcccaccgcc
ctcagatgttgcctgcgccaccataatcatcttcacttccactcctccacttgcttctca
atttcccggcgaattcgttgtcgccgcatatcatttggctatgaggtggttcggaggtac
tcggcgcagagtctggtagatatggtgatggaggagctcgactcaatccggaagcgcggt
atagctcgcgcctcaaataaattgggattgggaactagtgatcagcttattgaaagtaag
cctggaaagaagactctggagaaagggttgttgctagagttcaagaaggactcggagagg
gtcttactagcagttgtgcagaaaccggacggcaaaaagaactggatggtttctgatcag
aatggtgcgatggcatctatcaagccacagcaaattactttcattgtcccgggtatcaag
gactttgatcacatggagataccaaactttattcagaaagcacaagataatctggaccca
gcactgcttgaatttgcgtggattgagcttgttgaaaagaataaatcaataaccgtggaa
gagcttgcagagatgatgtttggtagtgcagaacctctggagagctattctgctcatttg
ttgctttcaaaggatgatatatacttcacaacaatggaaactaaaggttcatattccgtt
tatgggccaagacctgccgttcaggtggaagaacttatgcgcaggaagctagtcaaagag
gctgcagagagggaacttgaagagtttgtcaatttactgagatctgccagggatgcactg
tttcatgagaagcccccgaagtccatgtggagctctgaagagaaaaatcaaacaaaaatt
gagattcttcaagcatatgcaattgatgattgtcggaatgaagatgaaaagaagactgct
gggatgattttgaaggccataggatttcctaaaacagcatcagcagcaatgaatctcctc
atcgatattggttatttcccagtacacgtaaatcttgatatactgaagctcaacattcat
actgattatgcagaagagattcttatggccgccgaaaggcttttgctcgagtcacctgac
caagacgaggttgagaggaaagatctcactcacttaaaggtttatgccattgatgttgat
gaagctgatgagctcgatgatgcactgagtgcaactaggcttcaggacggccgtataaag
atctggatccatgtagcagaccctacaagattggtccagcctggaagcatcatagacaaa
gaggcaatgaagaggagcacttctgtgtttttaccatctgctacatacccgatgttccct
gagaagttagccatggaaggcatgagtttgaagcaagggaagcactgcaaagctgttaca
gtttcagttgtgctgcatggtgatggtggaattgcagaatactcagttgaaaactcattc
atcaaaccaacatatatgttaacttatgagagtgcaacagaactccttcatttgaacctg
gaagaggaggctgaactcagacttctttcagaggctgctacactgcgatttcaatggcgt
cgaaggcagggtgcaatagacgcatctacattagaagccagaatcaaggtgaccaaccca
gatgatccagagcccttgatcaagctgtatgtggagaatcaggcagatcctgctatgcgt
cttgtatctgagatgatgatactttgtggcgaagttatggccacttttggttctgtgaac
aaaattgccttaccttaccggggacaacctcagtcaaatattgatatatctgattttgct
catcttcctgaaggccctgttaggagttctgctatagttaaaaccatgcgtgctgctgaa
tttgatttcaggaagcctacgcgccacggagttttaggacttcctggatatgttcaattc
acatctcccatacgtagatatatggatctacttgctcactatcaggtaaaagcatttctc
aggggagattctcctcctttttcagcaggacagctggaggggatggcttctatggtaaat
atgaatataaggttagtgaggcggcttagctctagcagtctccgctattggatgatagaa
tacctgagacggcaaccaaaagaaaagaagttttctgccttggtccttcgattcatcaaa
gatagagttgctgcaatactcttgatggaggttggaatacaaggttctgcttgggtatct
ctaggtgtacaagtaggtgatgaagtaaaagttgtggtagaagaagcacatccacgtgat
gatgttcttatatttaaggaggctcaagcaatttag
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