Salvia hispanica (chia): 125221637
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Entry
125221637 CDS
T09851
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125221637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125221637
03041 Spliceosome [BR:
shis03041
]
125221637
03036 Chromosome and associated proteins [BR:
shis03036
]
125221637
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
125221637
Spliceosome [BR:
shis03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125221637
Complex B
125221637
Complex C
U2 SnRNP specific factors
125221637
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
125221637
TFTC complex
125221637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
125221637
NCBI-ProteinID:
XP_047979773
LinkDB
All DBs
Position
4:complement(27337874..27342203)
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQQSTGILCAINGSFSGGKSQEIAVARGKVLELLRPDDNGKLQSLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNTLEKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDSVARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRREDLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDVFKVTLDHDNDRVKELKIKYFDTIPVTSSLCVLKSGFLFAASEFGNHALYQFQAI
GDDPDVEASSATLMETEEGFQPVFFQPRKLKNLVRIDQIESLMPIMDMKVSNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPGGIRHIREDGRINEWRTPGKR
TIVKVGSNRNQVVIALSGGELIYFEVDMTGQLMELAKHEMSGDIACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDTMDILSLQSVSSPPESLLFLEVQASLGGEDGADHPANLFL
NAGLQNGVLYRTVVDMVTGTLSDARSRFLGLRAPKLFSIFVRGRQAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGESFNETAIPLRYTP
RKFVVHPKRKLLLIIESDQGAFTAEEREAAKKESFEAAGMGENGNAEQMENGDDEENNNP
LTDEQYGYPKAESGRWVSCIRVLDPKTTQTTCLLELQDGEAAFSMCTVNFHDKEYGTLLA
VGTAKGLQFWPKRSFEAGYIHIYRFKEDGKVLELLHKTQVEGVPLALAQFQGRLLAGIGP
VLRLYDLGKRRLLRKCENKLFPNSITSIQTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHVDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSLGAFLPFTSRDDVDFFSHLE
MHLRQEYPPLCGRDHMAYRSSYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEIM
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagtctaacccttcaacaatccaccggaatcctttgcgccataaatggc
agcttctccggcggcaaatcacaggagatcgcggtcgcgcgcggcaaggtcctggaactt
ctgcgccccgacgacaacggtaagctccagtctctcctctctgttgaaatcttcggcgct
attcgctcgttagctcaatttcgcctcactggtgcgcaaaaggattacatagtggtcgga
tcggattcgggccgcattgtaatcctcgagtacaataaagagaagaatacgctcgaaaaa
gttcatcaggagacgtttgggaagtcgggatgccgtaggatagtacccggccagtacttg
gcaattgaccctaagggtagagctgtaatgattggtgcctgcgagaagcagaagcttgtt
tatgttttgaatagggatagtgtagctaggttaactatttcgtctccgttggaggcgcac
aagagccacactatagtttactcgatttgtggggtggattgtgggttcgacaatcctatt
tttgcggctatagagctggattactcggaggcggaccaggaccccaccgggcaagctgct
aatgaggcgcagaagcatttgaccttttatgaattggatttggggcttaaccatgtgtct
aggaaatggtctgagcaggttgacaatggtgctaatatgcttgtgaccgttcccggtggc
ggggatgggccgagtggtgtgcttgtttgtgcggagaatttcgtaatatacaagaatcag
gggcatcctgatgtaagggcagtcataccaaggcgtgaggacttgcctgcagagcgtggt
gttctgattgtctcggctgctatgcataagcagaaatccatgtttttcttcttgttgcaa
actgaatatggtgatgtattcaaagtgacactggaccatgacaatgatagagttaaagag
ttgaagatcaagtattttgatactattccagtcacatcttccttgtgtgtcttgaaatct
gggtttctgtttgctgcatcagagtttggaaaccatgccttgtatcagtttcaggcgatt
ggtgatgatcctgacgtggaggcttcttctgctacactgatggaaactgaggaaggtttc
cagccagtgttcttccagcctagaaagctgaagaatcttgttcggatcgatcaaattgag
agcttaatgcctattatggatatgaaagtgtccaatctatttgaggaagaaacccctcaa
atcttttcactttgtgggcggggacctcgttcttctctgcggatactgagaccaggtttg
gctattagtgaaatggcagtttcacaattacctggtgttccaagtgctgtatggaccgtc
aaaaagaatgtgaatgatgaatttgatgcctatattgttgtctcttttgcaaatgccact
cttgtactttccattggtgaaactgttgaagaagttagtgatagtggatttcttgacact
acgccatctcttgctgtttctctgattggtgatgactccttgatgcaagtccacccgggt
ggtatcaggcatatcagagaagatgggcgtatcaatgaatggaggactccaggaaagaga
acaattgttaaggttgggtctaacagaaatcaggttgtcattgctctgagtggaggggag
ctaatatattttgaagttgatatgacagggcagctgatggagcttgcaaaacatgaaatg
tccggagacattgcctgtttagatattgctcctgtcccagaaggacgacagagatctcgc
tttctggctgttggatcttatgacaacacgatccgcatcttgtctttggaccccgatgac
acgatggacattttgagtctccaaagtgtttcatctcctccggagtccctactctttctt
gaagttcaggcttcattaggaggtgaggatggagcagaccaccccgctaacctctttcta
aatgctggtttgcaaaatggagttctatacaggacggttgtggatatggtgactggcaca
ctctcagatgctcgttctcgattcttaggtctcagagcacctaagctgttttctattttt
gtgagagggagacaagctatgctttgcttgtcaagtagaccctggcttggatatatacac
caaggtcacttccttcttacccctctgtcatatgagacacttgaatatgctgcctccttt
tcgtcggaccagtgtgcagaaggtgttgtagctgtggctggggatgctttgagggttttc
accatcgagagactgggagaatcatttaatgaaactgctatacctttgaggtatacacca
aggaagtttgttgttcatcccaagcgaaagcttttgcttataatcgagagcgatcaggga
gcattcactgctgaagaacgtgaagctgcaaaaaaggaatcatttgaggctgctgggatg
ggtgagaacggaaacgcagagcagatggagaacggtgacgatgaggagaacaataatcct
cttacagacgaacaatatggttatcccaaggcagagtctggaaggtgggtttcttgtatc
agagttttagacccgaagacaacacagacgacctgtttacttgagcttcaggatggtgaa
gcagcatttagcatgtgcactgtcaattttcatgacaaagagtacggaactcttttggct
gtaggaacagcaaagggcctacagttttggcccaaaagatccttcgaggctggatatatc
cacatatataggttcaaggaagatgggaaggttcttgaacttctgcataaaacacaagtg
gaaggtgtccctcttgctttggcccaatttcagggaagactgctggctggaataggacct
gtgcttagattgtatgatttggggaaaagaagattgcttaggaagtgtgagaataagttg
ttccctaattcaattacatctatccagacataccgggatcggatttatgttggtgatatg
caagagtcattccactactgcaagtatagacgtgatgaaaaccagctgtacatattcgct
gatgacacagtccccagatggcttactgccgcacagcatgtagatttcgacaccatggca
ggggcagacaaatttggaaacgtttactttgtgcggttgccacaagatgtctctgatgag
atcgaagaagatccaactggtggtaagataaaatgggagcaggggaagctgaatggggca
ccaaacaaagtggaggaaatagttcaattccacgttggtgatgtggtcacttgcttgcag
aaggcatctttgattccaggaggtggggagtgcctcatttatgggactgtaatggggagt
ttgggggcgttcctcccattcacatcccgcgatgatgttgatttcttctctcatttggag
atgcaccttcgacaggagtacccacctttgtgtggcagagaccacatggcctatagatct
tcctacttcccggtgaaggatgtgattgatggagatttgtgcgaacagttcccaactctg
cctatggatatgcaacgcaaaattgcggacgagctcgacagaactccaggggagattatg
aagaaactggaagagataagaaacaaaatcatctga
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