KEGG   Salvia hispanica (chia): 125221780
Entry
125221780         CDS       T09851                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
shis  Salvia hispanica (chia)
Pathway
shis03030  DNA replication
shis03410  Base excision repair
shis03420  Nucleotide excision repair
shis03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    125221780
   03410 Base excision repair
    125221780
   03420 Nucleotide excision repair
    125221780
   03430 Mismatch repair
    125221780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shis03032]
    125221780
   03036 Chromosome and associated proteins [BR:shis03036]
    125221780
   03400 DNA repair and recombination proteins [BR:shis03400]
    125221780
DNA replication proteins [BR:shis03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    125221780
  DNA Replication Termination Factors
   ELG1-RFC complex
    125221780
Chromosome and associated proteins [BR:shis03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    125221780
DNA repair and recombination proteins [BR:shis03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     125221780
  Check point factors
   HRAD17(Rad24)-RFC complex
    125221780
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 nSTAND_NTPase5 Mg_chelatase AAA_lid_RFC1 Rad17 AAA_16 Viral_helicase1 RuvB_N AAA_5 RCF1-5-like_lid AAA_11 nSTAND3 AAA_25 AAA_assoc_2 AAA_19 AAA_28 MeaB bpMoxR IstB_IS21 DNAX_ATPase_lid ABC_tran AAA_18 AAA_24 AAA_30 AAA_3 AAA_7 NTPase_1 RNA_helicase DO-GTPase1 KTI12
Other DBs
NCBI-GeneID: 125221780
NCBI-ProteinID: XP_047979987
LinkDB
Position
4:complement(9473788..9476823)
AA seq 331 aa
MASASSSSVGPEIPWVEKFRPTKVSDIVGNQDAVARLQVIARDGNMPNLILAGPPGTGKT
TSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEA
DSMTSGAQQALRRTMEIYSNSTRFGLACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLM
VVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATNSGFGFVNQENVFKVCDQPHPLHV
KNMVRQVIDGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMPEYLKLEFMKETGFA
HMRICDGVGSYLQMSGLLAKLALARETAKAA
NT seq 996 nt   +upstreamnt  +downstreamnt
atggcgtctgcatcatcgtcgtcggtggggccagagatcccatgggtggagaagtttcgc
cccactaaggtgtctgatatcgtcggcaatcaagacgccgttgcccgcctccaagtcatc
gcccgcgatggcaacatgcccaatcttattttggctggtcctcctggaactggtaagact
actagcatattggctcttgctcatgagctccttggcccaaattatagagaggcagtcttg
gagctaaacgcatcagatgatagaggaattgatgttgtgagaaacaaaataaagatgttt
gcccagaagaaagttacattgccccctggaaggcacaagattataattttggacgaagct
gacagcatgacttcaggagcacaacaagctttgagaaggacgatggaaatatattctaac
tctacacgttttgggctagcttgcaacacttcatcaaagattattgagcctattcagagt
cgctgtgctcttgttcgattttctagactatccgatcaagagatccttggacgtctcatg
gtggtggttgcagctgaaaaggtaccttatgttccagaaggtcttgaagcaattattttt
actgctgacggtgatatgaggcaagcattgaacaacttgcaagccacaaatagtggattt
gggtttgttaatcaagaaaatgttttcaaggtttgtgatcagccccatcccttgcatgtc
aaaaatatggtacgccaagttattgatgggaaattcgacgatgcttgtgctggattgaag
cagctctatgatttgggctattcaccaactgatatcattaccactctattccgaatcata
aaaaactatgatatgcctgagtatctgaagttggaatttatgaaggagacaggatttgct
catatgaggatctgtgatggagttggttcatatcttcaaatgtccggtttgctcgcaaag
cttgcattggcccgagaaacagccaaagcagcttaa

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