Salvia hispanica (chia): 125221795
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Entry
125221795 CDS
T09851
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1-like isoform X1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shis04131
]
125221795
Membrane trafficking [BR:
shis04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
125221795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
Beta-prop_EML_2
ANAPC4_WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_RSE1_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_IFT122_1st
P11_C
Motif
Other DBs
NCBI-GeneID:
125221795
NCBI-ProteinID:
XP_047980007
LinkDB
All DBs
Position
4:33688521..33699046
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AA seq
1121 aa
AA seq
DB search
MYMAYGWPQVIPLELPNCPSTQQIVYLKVFNSLLLVVAPTHIELWSSSQHRVRLGKYKRD
VDSIQREGENLRAIWSPDTKLIAVLTSSFHLHIFKVQRAETKIYIGGKQPTGLFLSNISL
VLSEQVPFANKNLTVSNFVCDNKHMLIGLSDGSLYTISWKGEFCGAFILDMLPNDGNDLN
KLSNHYSNGTVASGVQMDDGPNHTNHVVSQTSGIVHLEFSITLRLLFVLFSDGDLIQCSV
SKRGLKHAESVIVEKRFASGEAVCASVAPDQQILAVGTQKGSVELYDLADSASLIRSVSL
HDWGYSVEDTGPVNCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSVSSPV
VNPNQDFKYEPMMGGTSLMHWDEHGYRLYAMEEGSSERLIAFSFGKCCLNRGVSGTTYVR
QVIYGEDRLLIVQSEDTDELKILHLNLPVSYILQNWPILHVAASKDGMYLAVAGLHGLIL
YDIRLKRWRVFGDVTQEQQIQCRGLLWLGKIVVVCNYVESSSTYELLFYPRYHLDQSSLL
CRKPLLTNPMVMDVYQDYLLITYHPFDVHIYHVKITGELSPSSSPDLQLSTVRELSIMTA
KSHPAAIHFIPDQLPHDDMSRSDTSSTHEPSKCLILRINGDLSLLDLDDGRERELTHSVE
LFWVTCGQLGEKTNLIEEVSWLDYGHRGMQVWYPSLGADPFKQEDFLQLDPELEFDREVY
PLGLLPNSGVVVGVSQRMSFSACTEFPCFEPSPQAQTILHCLLRHLLQRDKREEALRLAQ
LSAEKPHFSHCLEWLLFTVFDAEISRQYSSKNQGAVANNTPSLLEKSCELIRNFPEYYDV
VVSVARKTDGRHWANLFSAAGRSTELFDECVQQRWYRTAACYILVIAKLEGPAVSQCCAL
NLLQATLNESLYELAGELVRFLLRSGREYEHSSTDSERDSPRLLGYFLFPSSFRKQSNDA
KSPSSKEPSAHIASVKNILESHASYLMSGKELSELVAFVKGTQFDLVEYLQRERYGSARL
EDFASGLEMIGQKLHMGTLQNRLDAEFLLANMCSVKFKEWIVVLATLLRRSEVLYDLFRH
NLQLWQAYSRTIQAHEAFAEYHDLLEELEGRLSLTAYAEDT
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcttatggatggccgcaggtcatccctctcgaattgcccaactgtccttcc
acacagcagatcgtgtatcttaaagtcttcaatagcttgctccttgttgtggcgccgact
cacatcgagctctggtcgtcttctcagcacagagtgaggttggggaagtataagagagat
gtggattctattcaaagagaaggggagaatttgcgggcaatttggagccccgacactaag
ctcattgctgttcttacatcgtcctttcatcttcacatttttaaggttcaaagggcagaa
acaaaaatatacattggcggcaagcaaccaactggtttatttctctcaaacatatcctta
gttctcagtgaacaagtcccatttgcaaacaagaatttgacagtgagcaactttgtttgt
gacaacaaacacatgctgatcggactatctgatggatcactgtatacaatatcttggaag
ggtgagttctgtggtgcctttatccttgatatgttgccgaatgatggaaatgatctgaat
aagttatccaatcactatagcaatggtacagttgccagcggagttcaaatggatgatggt
cccaaccacacgaaccatgtcgtatctcagacttcgggaattgtccatcttgaattttcc
attactttgcggttactttttgtgctgttttctgatggggatctaattcagtgttctgtg
agcaagaggggtctaaaacatgctgaatcggttatagttgaaaagcgatttgcttcaggg
gaagctgtatgcgcatcagtggctccagatcaacagattcttgctgttgggactcaaaaa
ggttctgttgagctgtacgaccttgcagattctgcatcgcttattcgctccgtgtcattg
catgattggggatattctgtggaagatactggccctgtcaattgtattgcttggacacct
gataattctgctttcgcagttggatggaagttaaggggacttactgtttggtctgtctca
ggctgtcgtttgatgtctacaatccgccagataggtttgagctctgtatcttctcctgtg
gtgaatccaaatcaggattttaagtatgagcccatgatgggaggcacgtcgctgatgcac
tgggatgaacatggatataggctttatgctatggaagaaggatcttcagagagacttatt
gcattttcttttggaaagtgctgcctaaataggggtgtttctggtacaacttatgtacgc
caagttatttatggtgaagaccgcttgcttattgtacagtctgaagataccgatgaactt
aagatcttgcacctcaatcttccagtgtcttatattttgcaaaattggcctattcttcat
gttgctgccagtaaggatggaatgtatttggctgttgctgggcttcatggtttaatcttg
tacgacattcgactaaagaggtggagagtgtttggagacgttactcaggagcaacagatt
cagtgcaggggattgttatggctgggaaaaattgttgtggtctgcaattacgtggaatct
tcgagcacatatgaattgcttttctacccaagatatcacctcgatcaaagttcactactt
tgccggaagccattgcttacaaatccaatggtcatggatgtttatcaagattatttgcta
atcacttaccacccgtttgatgttcatatataccatgtgaaaataactggggaattgtca
ccttcaagctctccagatttacagctttctacagtacgagaactttcaatcatgactgcg
aagagccatcctgctgctattcattttattcccgatcagcttccacatgacgacatgtca
agaagtgatacatcatcaacccatgagccttctaagtgtttaatactgcggattaatggg
gacctttcactacttgatttggatgatggccgggaaagagagctcactcactctgtagag
ttattttgggttacctgtggtcaattgggggagaaaactaacttaattgaggaagtttcc
tggttagactatggtcatcgggggatgcaggtttggtatccatctttaggtgctgatcca
tttaaacaggaagactttttacagttggatccggagctggaatttgatcgtgaggtatat
cctcttggtctacttcctaattctggtgtagtagttggtgtttcccagagaatgtcgttt
tcagcatgtacagagttcccatgttttgagccgtctcctcaagctcaaaccatattacac
tgtctactacgacatcttcttcagagggacaagagggaagaagctctacgccttgcccaa
ttatcagcagagaagccacatttttctcattgcctggaatggcttctatttacagttttt
gatgctgaaatttccagacagtattcaagcaaaaaccagggtgctgtagctaacaacact
ccctctcttctggaaaagagctgtgaattgatcagaaacttccctgaatattacgatgtt
gttgttagtgtagcacgcaagactgatggtcgacattgggctaatttgttttctgctgcc
ggcagatcaactgagttgtttgacgaatgtgttcagcaaagatggtaccgcactgcagca
tgctatatacttgtcattgctaagcttgaaggtcctgcagtgagtcaatgttgtgctttg
aatttattacaggctacacttaacgagtctttgtacgaactggctggagagctggtgagg
tttctacttaggtctggaagagaatatgaacactctagtacagattctgagagagattct
ccaagactcttaggatattttcttttcccgtccagttttaggaagcaatcaaatgatgca
aaaagcccctcgtctaaagagccgagtgcacatattgcttctgttaaaaatattcttgaa
agccatgccagctatttgatgtctggaaaagagctttcagaacttgttgcatttgtcaaa
ggcacacagtttgatctagtggagtatcttcaacgagaaagatatggaagtgctcgtctg
gaggactttgcctcagggcttgaaatgattgggcagaagctgcatatgggaacgctgcaa
aatcgtttggatgcagaattcctcttagcaaatatgtgctcagtcaaatttaaggaatgg
atcgtggtcttggccacattattgaggcgctcagaggttctctacgatttatttaggcat
aatttgcagttgtggcaagcatacagccggacgatacaggcacatgaagcttttgctgaa
taccatgacttgttggaagagctggagggaaggctttcgttaactgcatacgctgaagat
acatga
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integrated database retrieval system
