Salvia hispanica (chia): 125221865
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Entry
125221865 CDS
T09851
Name
(RefSeq) cell division control protein 48 homolog C-like isoform X1
KO
K14571
ribosome biogenesis ATPase
Organism
shis
Salvia hispanica (chia)
Pathway
shis03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125221865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shis03009
]
125221865
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
125221865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_16
AAA_5
RNA_helicase
AAA_22
AAA_14
Rad17
AAA_2
AAA_28
ATPase_2
nSTAND3
DUF815
Mg_chelatase
NPHP3_N
AAA_18
IstB_IS21
NACHT
AAA_17
AAA_33
TIP49
ABC_tran
TsaE
Bac_DnaA
Vps4_C
Parvo_NS1
NB-ARC
Viral_helicase1
ORC-CDC6-like
AAA_30
Motif
Other DBs
NCBI-GeneID:
125221865
NCBI-ProteinID:
XP_047980136
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All DBs
Position
1:49040834..49047536
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AA seq
720 aa
AA seq
DB search
MPSSHRETPLSVKESSMEGGSGSVAGTLHACDEPILRCPVETTADAGANNLSDAQNLHLS
VDEPAAKRQKNDENQNADRQIEVARASPSASHSGSNGGELDSATNHKSGGDLGEKDANGV
NVAVIGELEQKKELGNSNREMKETENKWPMFSDIVGGLCILDNLKDEVIAPMLQLKLLRH
FGGEPMNAILLHGPPGCGKTMLARAIGNEARVPFYEASAVALKSGASGILELFSRAYKNA
PSIVFIDEIDALTSETESLRHQCPVKQLIACMKKAVNDGSDSEITNSGPGGYVLTIGATN
KPNALDLALRRRFDREFILDVPDNNERHWILKVLTRNNKVEGCLDLSELARWTQGFVAGD
LVELLNKARMIAFNDAITYRADKKSFNDGYEANRKPFSDEELEKLSLTMWDFEQAIETVW
PSAEMEDFSLTPYLNWDDVGGLQLLKLEFERRIVKRIKYPQVYESLGEIGVKNFPTSFFL
YGPHGCGKALVVEALAKEAGAKFMHIQGTELLKFGSWSRLMVANIFQCAKLHSPCIVFFD
ELELFDLDAVDEYPEDEDLWKSEAYNEVGIEVYELKNESRVYVIVSSSRVEILDHLPLIK
KDFDRTLYAPLPTPEERGEILKALALHKPIDAEVDLAALGKHDACNNFSGADLFNLVTLA
SLFAIERPSLSCGGSMTIKNEDFDEVFYKIAPSLSAEEIQKWALHAETIDVVRGLSVTQW
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgccctccagtcaccgggaaactcctctttccgtcaaagaatcgagcatggagggagga
agcggcagcgtcgctgggactctccatgcatgtgacgagccaattctgcgctgccccgtc
gagaccaccgccgacgccggagcaaataacctcagtgacgcgcaaaacctgcacttgtcc
gtggacgagccagcagccaaacggcaaaaaaacgacgagaatcagaatgcggaccgacaa
attgaggttgctagggcttccccttcagctagtcattcaggttctaacggtggggaactc
gattctgctacgaatcataaatctggtggtgatttgggagagaaggatgcgaatggggtt
aatgtggcagtaattggggaactagagcaaaaaaaggagttagggaatagtaatagagag
atgaaggagactgagaataagtggccaatgtttagtgatattgttggtgggttgtgcatt
ttagataatttgaaagacgaggtgattgcgccgatgctccagttgaagctattgcggcac
tttggaggcgaacctatgaacgcaattctgttgcacggcccaccgggctgtgggaaaacc
atgttggctcgagccattggcaatgaggcccgggtgccattctatgaagcatctgctgtt
gcgttgaagtctggagcttcaggtatcctagagttgttctccagagcatacaagaacgca
ccatctattgtgttcattgatgaaattgatgcattgacatcagaaacagaaagtttgcgc
catcaatgcccagtgaaacagttgattgcttgcatgaagaaagctgtgaatgatggttct
gattctgaaataactaatagtggacctggtggctatgtgctgacaattggagcaaccaat
aagcctaatgctcttgaccttgccttaagacggcggtttgatcgtgaatttattttagat
gttccagacaacaatgaacgtcattggatactaaaagttctaacacgtaataataaggtt
gaaggttgtcttgatctttcagagttagctaggtggactcagggttttgtagcaggagat
ttggtagaactattaaataaggctcgtatgattgcttttaatgatgccattacatataga
gctgacaaaaagagttttaacgatgggtatgaagctaatagaaaaccattttcagatgaa
gaattggagaaactcagtttaaccatgtgggactttgagcaagctattgagacggtttgg
ccttctgctgaaatggaagatttttccctcacaccatatttaaactgggatgatgttgga
ggccttcaattgttgaaattggaatttgaacggcgcatagttaagcgtataaagtatccc
caagtttatgagtctcttggggaaattggggtgaagaactttccaacctcctttttcctt
tatggtcctcatggttgtggcaaggcattggttgtcgaggctttggctaaagaagcagga
gcaaaattcatgcatatccagggcactgaactattgaagtttgggtcatggagcagattg
atggtggcaaatatttttcaatgtgcaaaacttcactctccatgtatagttttctttgat
gagttggagttatttgacctagatgctgtcgacgaatatccagaggacgaagatttatgg
aagtcggaggcatataatgaggtggggatcgaagtttatgaattaaaaaacgagtcacgt
gtttatgtgattgtttcatcaagtagggtagagattttggatcatctcccgctcatcaaa
aaagactttgataggactttgtatgctcctcttcctactccagaagaaagaggagagata
ttgaaagctctagctctacacaagccaatagatgctgaagtggatctggcggctctagga
aaacacgatgcttgtaacaatttcagtggcgctgatctatttaatttggtgacattagct
tctctgtttgccattgaacgaccgtcattgtcctgtgggggtagcatgaccatcaaaaac
gaagatttcgacgaagtgttctacaaaatcgccccttctctctcggccgaggaaatccag
aaatgggcgctacacgcggagacaattgatgttgttcgcggcttatccgtgacgcagtgg
tag
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