Salvia hispanica (chia): 125222036
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Entry
125222036 CDS
T09851
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 2-like
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shis04121
]
125222036
Enzymes [BR:
shis01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125222036
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125222036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
PA
zf-C3HC4
zf-C3HC4_2
zf-rbx1
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-ANAPC11
AF_0924
Prok-RING_4
zf-RING-like
zf-C3H2C3
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
125222036
NCBI-ProteinID:
XP_047980387
LinkDB
All DBs
Position
4:56869657..56872956
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AA seq
492 aa
AA seq
DB search
MKMSDFWVLFCYLFCLMGSFAAYGNVVLIGNNVTLSFDDIEANFAPSIKESGICGTLSVA
EPLDACSPLTNKVVPAANNTRSPFVLIVRGGCSFDEKVRRAQAAEFSVAIVYDNDDDLVA
MAGNSAGIKIHAVFVRKVCAEALKKYADVSDTEVWILPSFEDSAWSIMAISFISLLAMSA
VLATCFFVRRHRIRRGRPQAPRVREFHGMSSRLVKAMPSLVFTAVLEDNCTSATCAICLE
DYTMGEKLRILPCRHKFHAMCVDAWLTSWRTFCPVCKRDARTSNGEPPANESTPLLSSAA
DSLASSSLLSSFRSSLASSSAIQIGGSSRTPSVSLPQSVSSTPYNPHSLLSRHQSPHLGA
SRSSVDLQNMSSQRSRGVYLVSPHSLGYPSLSSLNSRYMSPYIPSPGMGSSSYLGSSSRQ
ANPLLYGESATTESRPLHYSGSVTSFYDGSSSHQANPLHYGESATTEARALHYSESATSF
SPFTSAHSLPDC
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgtctgatttctgggtgttgttctgctacttgttttgtttaatgggctctttt
gcagcttatggaaacgtggttttgataggcaacaatgttaccttgtcgttcgatgacatt
gaagctaattttgctccgtccattaaagaatccgggatatgtgggacgctgtctgtggct
gagcctttggatgcctgctcgccactgactaataaagtcgtcccagcagcgaataacacc
agatctccgtttgtgctgatagtccgaggtgggtgtagctttgatgagaaagtcagaaga
gctcaggctgcagagtttagcgtggccattgtctatgataacgatgatgatttggttgca
atggctggaaattctgccggcataaagattcatgcagtgtttgtcagaaaagtctgtgcc
gaggcacttaagaaatatgccgatgttagtgacacggaggtgtggatattgccgagcttt
gaagactcggcgtggtctataatggctatctccttcatctcgttgctcgccatgtctgct
gtgttggctacatgcttctttgtccgaaggcaccgtattagaagaggacgacctcaagct
ccacgtgtgcgagaattccacgggatgagcagccgcttggtgaaagccatgccgtcccta
gtgttcacggctgttctcgaggacaactgcacttccgcgacgtgcgccatatgtctcgaa
gactataccatgggcgagaagctacggatactgccatgtcgacataaattccacgcgatg
tgtgtcgacgcgtggctgacgtcatggagaacgttctgcccggtatgcaagcgtgatgcc
aggaccagcaacggcgaaccaccagcgaacgaatccacaccactgctctcgtccgcggcc
gattccctcgcttcctcctcactcttgtcatcttttaggtcatcgctagcatcgtcatca
gccatccaaataggtggatcttcccggacaccgtcagtctctctgcctcagtctgtctcc
tcaaccccttacaacccgcattcactcctctcccgccaccaatcccctcatctaggtgct
agccggagctcggtcgacctccaaaacatgtcgtcgcaacgatcccggggagtgtattta
gtttcaccccactcgttaggttacccttccttgtcatctctcaactcaagatacatgtcc
ccttacatcccgagccccggcatgggctcctcgagctacctcgggtcttcaagtcgtcaa
gctaaccctttgctctatggcgagtcggccacgactgagtcgagaccattgcattatagt
gggtcagtcacgagcttctacgatgggtcttcgagccatcaagctaaccctttgcactat
ggcgagtcagccacgactgaggcgagagcgctgcattatagcgagtcggccacgagcttc
tcgccgttcacctcggctcattcgctgccggattgttag
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