Salvia hispanica (chia): 125222054
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Entry
125222054 CDS
T09851
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
shis
Salvia hispanica (chia)
Pathway
shis03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125222054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125222054
03036 Chromosome and associated proteins [BR:
shis03036
]
125222054
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125222054
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125222054
PBAF complex
125222054
GBAF(ncBAF) complex
125222054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Zn_ribbon_2
RPA_interact_C
Motif
Other DBs
NCBI-GeneID:
125222054
NCBI-ProteinID:
XP_047980414
LinkDB
All DBs
Position
4:23589516..23595183
Genome browser
AA seq
771 aa
AA seq
DB search
MAVSSCLEARARWRKRKRDSVARKSKLKEQDDDILDDNDDDDDPDLDPPQNHLESEDDPQ
IPNSDRTAQIIGEKGDEKLVAGGLKLCEFPVAIKREIFRPHSSVFRILEYERAARFGDSR
AQGQSGVPVLENISYGQLQALSAVPRDNPSLLGVPSEETASGSGGGSYVITPPRIVAGSG
VTKRLGSAGRVHVLPVHSEWFSPSSVHRLERQVVPHFFSGKSTEHTPEKYMECRNFIVAK
YMENPEKHLAVANCQGLVAGIDNEDLTRIVRFLDHWGIINYCATPPKHEAPKEGTYLSED
SNNELRVPLAALKSIDSLIKFDKPKCRLKATDVYPELANQQEEDSDFDSVIREQLSEHQC
NCCSRPISAVYYQSQKEVDVRLCLDCYQEGGFVAGHSSLDFMKENYTKDYGDLDGDSWSD
QETLLLLEGMQLYSENWNKIAEHVGSKSKAQCILHFVRLPLDGAPLDNIDVPSTSGSSSL
SNHDGHGRSEPNSNGTCLEGEDTENKFPFSSSGNPVMSLVAFIASALGPRVAAACAHASL
GSLSTESGKEGHTGGPLSQHDAEGATLSAEKVISAAEDGLDAAAMKSKLFADHEEREIQR
LSANIINHQLKRLELKLKQFAEIETLLMRECEQMERTRQRIAAERGLMMSGQFGSAGVQR
PMGLPVVSNAAMNNSAGNSRQQHVQGSHQPFVSGYGNTQPIHPHMSLMQQQQQQHQQQQQ
GMYGLGPRLPLSAIHPSSSAPNAMFNLASNSQPSLGHPMLRPLSGTKSGLG
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggctgtatcttcttgtttagaagcaagagcaaggtggaggaagcggaaaagggactca
gtagcgcgtaagtccaagctgaaagagcaggatgatgacatacttgacgataatgatgac
gatgatgacccagatctggatcccccgcagaaccatctggaaagtgaagacgatccgcaa
attcctaattctgataggacagcccagataataggagagaaaggggatgaaaagttggtt
gctggtggactgaagttatgtgagtttccagttgcgatcaagagggagatatttaggccc
cactcatctgtctttcgaattttggaatatgagagggctgcgagatttggggatagcaga
gcccaagggcagagtggagtgccagtgttggagaatatttcttatgggcagctgcaggca
ctttctgcagtgcctcgagacaatccatctcttttaggggttccctcagaggagactgca
agtggtagtgggggtggttcgtatgtgatcacaccacctaggatagttgcaggctctggt
gttactaaaaggctcgggagtgcaggtcgtgttcatgttctgccagtacattcagaatgg
ttttcaccaagttcagtgcatagattggaaagacaagtggttccacatttcttttctggg
aaatctacagaacatacacctgaaaagtacatggagtgtcggaatttcattgttgcgaag
tatatggaaaaccctgaaaagcacctagcggtggctaactgccagggtctagtagctggt
attgataatgaggacttaactcgaattgtgaggttccttgatcattgggggattatcaat
tattgtgcaactcctcctaagcatgaggccccaaaggagggaacttacttgtctgaggac
tcgaataatgaacttcgcgtgcctttagctgctttgaaatctatagatagcttaatcaag
tttgataagccaaaatgtaggctgaaggcaactgatgtttatccagaacttgcaaatcag
caggaagaggattccgactttgacagtgttataagagagcaattatccgagcaccaatgc
aactgttgttcacgacctatttctgcagtgtactaccagtcacagaaggaggttgatgtg
agactctgtttggattgctatcaagagggtggatttgttgctggtcactctagccttgat
tttatgaaagagaattacacgaaagattatggagatctggatggggatagttggtctgac
caggaaacattgctgctgcttgagggaatgcagctttatagtgaaaactggaataaaatt
gccgagcatgttggctccaagtcaaaagcacagtgcattctccattttgtccgtcttcct
ctggatggtgctccactggacaatattgatgttccaagcacatctggttcatcgagtttg
agcaatcatgatggtcatggaagatcagagccaaattcaaatggtacctgcttggaagga
gaggacactgaaaataaatttcctttctcaagctctgggaacccggtcatgtctctggtg
gcgtttattgcttctgcattggggccaagagtggctgcagcctgtgcccatgcatctctg
ggttcattgtctacggagagtggcaaggaagggcatactggaggtcctttgagccagcat
gatgctgaaggtgctacactatctgctgaaaaagtgatctctgcggccgaagatggtctt
gatgcggcagccatgaaatcaaaactttttgctgatcatgaagagcgagaaatccagcgg
ttatctgctaatatcataaaccatcagttgaagagattggagctaaagttgaagcagttt
gcagaaattgaaaccttgctgatgagagaatgtgagcagatggaaaggacaaggcagagg
attgctgctgaacgcggcctcatgatgtcgggacagtttggttctgctggggtgcaacgg
ccaatgggactaccggttgtcagtaacgctgctatgaacaattctgcaggaaatagtagg
cagcagcacgttcaaggctcccatcaaccttttgtttctggatacggaaatacccaaccc
atccacccccacatgtccctgatgcagcagcagcaacagcaacatcagcaacaacaacag
ggaatgtatggccttggtcccaggctgcccctttcagctatacatccatcttcttcagcc
cctaatgcaatgttcaacctggcatccaattctcagccttctctcggccatcctatgctc
agaccactatccgggactaaatctggtttaggttag
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