KEGG   Salvia hispanica (chia): 125222080
Entry
125222080         CDS       T09851                                 
Name
(RefSeq) transducin beta-like protein 3
  KO
K14555  U3 small nucleolar RNA-associated protein 13
Organism
shis  Salvia hispanica (chia)
Pathway
shis03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    125222080
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:shis03009]
    125222080
Ribosome biogenesis [BR:shis03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    125222080
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Utp13 EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_Nup120_160 Beta-prop_WDR19_1st Beta-prop_DCAF12 Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_Vps41 eIF2A Beta-prop_WDR75_2nd WD40_like Cytochrom_D1 SGL
Other DBs
NCBI-GeneID: 125222080
NCBI-ProteinID: XP_047980468
LinkDB
Position
4:complement(25580400..25586113)
AA seq 871 aa
MASAVALKKNYRCFQSLQQFYTGGPYAVASDASFIVCACDDTIKVVDSSNSAIRSTIEGD
SEPVTALVLSPDDKFVFSSSHSRQIRVWEVSTLKCIRSWKGHEGPVMGMACHSSGGLLAT
AGADKKVQVWDVDGGFCTHYFKGHKGVVTSLMFHPDPNRLLIFSGGDDSTVRVWDLVKKK
CIATLEKHQSTVTSIAISEDGWTLLTAGRDKVVNVWDLHDYSCKTTVLVYEALEAVCTFD
AASPFALCLSAFAQKIGKKISSSSVQFLTVGERGIVRIWNSDGAVCLFEQKSSDLAVSSE
KEEVKRGFTSAMMLPLGQGLLCATADQQFLIYDLDKNVDDGLNLALRKRLIGYNEEIADM
KFLGDEEQYLAVATSVEQVRVYDLASMSCSYILTGHSDVIPCIDTCVSASGKTLIVSGSK
DNTVRLWEAESQRCIGVGIGHMGAIGAVAFSKKNRNFCVSGSSDRTLKIWSFDGVSDDAG
EASNLKAKAVVAAHDKDINSLAVSPDDSLVCSGSQDRTAAIWRLPDLVSVVVLKGHKRGI
WSVEFSPVDHCVITASGDKTIKLWAISDGSCLKTFEGHTSSVMRASFITRGTQFVSCGAD
GLVKLWTVKTQECLATYDQHEDKIWALAIGKKTEMLATGGVDAVVNLWHDSTAAEKEEAF
RKEEEDVLKGQDLENAVLDRDYTRAVRLAFELRKPHKLFELFSEVIRKPNADVQIEKALR
PFDKEEVRLLLEYVREWNTKPKLCHIAQFVLHRLFTILPPTDLVEMKGIGELLEGLIPYS
QRHYTRIDRLQRSTYLLDYTLTGMSVIEPEANATEPRKNEDLGESAREEGEDYPEPKDAS
TKKRKTRKSQDKKQKKSKVAYVSTATISSPA
NT seq 2616 nt   +upstreamnt  +downstreamnt
atggcgtcggcggtggcgctcaagaagaactaccgatgcttccaatctctgcagcagttc
tacaccggtggtccctacgccgtcgcctccgacgcctctttcatcgtttgcgcctgcgac
gacaccatcaaggtcgtcgattcttctaactccgctatcagatcaacaatcgaaggcgac
tccgagcccgtgaccgccctcgtcctcagccccgacgacaagttcgtcttctcgtccagc
cacagccgccaaattcgagtctgggaggtctccacgctcaaatgcattcgctcgtggaag
gggcatgaagggccagtaatgggaatggcttgccattcctcaggaggattgttggcaaca
gctggtgctgataagaaagtgcaagtgtgggacgttgatggaggcttctgcacacattat
ttcaaggggcataaaggggtggtaaccagcctcatgttccacccagacccaaaccggtta
cttattttctccggtggggacgacagcactgttagggtatgggaccttgtgaagaaaaag
tgtatcgcaacactagaaaaacatcaatcaacagttacttcgattgcaatatctgaagat
ggatggacgttgctgactgctggaagagacaaggttgtgaatgtatgggacctgcacgat
tatagctgtaaaactactgtactggtgtatgaagcgctagaagccgtgtgtacatttgat
gcggcatccccttttgccctatgtttgtcagcatttgctcagaaaatcgggaagaagatc
agttcatcatctgttcagtttttaacagttggtgaacgtgggatcgtgcggatatggaac
tctgatggggcagtgtgcctctttgagcagaaatcttcagatttagcagtcagctcagag
aaagaagaagttaaaagaggttttacctctgcaatgatgcttccgttaggccaagggttg
ctctgtgctacagctgaccaacagtttcttatttatgatttggataaaaacgtcgatgat
ggtttgaacttggccctgaggaaaagactaattggatacaatgaagagattgcagatatg
aagtttctgggtgacgaggaacaatatctcgcagttgctacaagtgtcgaacaggtaaga
gtgtatgatctggcatcaatgtcatgttcctacatattgactgggcatagcgatgtgatt
ccatgcattgacacctgtgtgtcagcttctggaaaaacacttatcgtttcgggaagtaaa
gataacactgttagattgtgggaagccgaaagccaacgctgcattggtgttggcataggt
cacatgggtgctattggtgctgttgctttctcgaagaaaaacaggaacttttgcgtcagt
ggtagtagtgatcgcacattgaagatttggagctttgatggagtgtcagatgatgctgga
gaagcttccaatttgaaagcaaaagcagtagtggcagcccatgacaaagatataaactcg
ttggcagtttcacctgatgatagccttgtttgcagtggttcccaggatcgtacagcagcc
atatggaggcttcctgatctggtctcagttgttgtacttaaaggtcataagagaggtatt
tggtctgtggagttctctccagtggatcactgtgtcataacagcatcgggtgacaagaca
atcaaactatgggccatctctgatggctcctgtctaaaaacatttgaaggacacacatca
agtgtcatgagagcttcatttattacacgggggacccaatttgtttcttgtggagctgat
ggtttggtgaagttatggacagtcaaaactcaagaatgcttggccacttatgatcaacat
gaagacaagatatgggcattggcaattggtaagaagacggaaatgcttgctacaggtggt
gttgatgcagttgttaatttgtggcatgactctacagctgcggaaaaggaggaggccttc
cgtaaagaagaagaagatgttttgaaagggcaagatttggaaaatgctgtattagatcgt
gactacactagagccgtccgacttgcatttgaacttcgcaagcctcacaaactttttgaa
ttatttagtgaagtcatcaggaagccaaacgcggacgttcagattgagaaggctcttcgt
ccttttgataaggaagaggttcgtctactcttagaatacgtaagagaatggaatacgaaa
ccaaaactctgccatatagcacagtttgttctgcatcgcctatttaccatcctccctccg
acagatctagtcgagatgaagggcattggagaactgcttgaaggccttattccgtattca
cagagacactacaccagaatcgataggttgcaaaggagcacatacctcttggactatacc
ctaacgggaatgtctgtcatcgaacccgaagcaaacgccacagaaccaagaaaaaacgag
gatttaggagaatcagctagggaggaaggcgaggactacccagagcccaaagatgcatca
acaaaaaagcgaaaaacacgaaagtctcaagataaaaagcagaagaagtcgaaggtggcg
tatgtgagcacagcgaccatatcctctccagcctaa

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