Salvia hispanica (chia): 125222080
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Entry
125222080 CDS
T09851
Name
(RefSeq) transducin beta-like protein 3
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
shis
Salvia hispanica (chia)
Pathway
shis03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125222080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shis03009
]
125222080
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
125222080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Utp13
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_Nup120_160
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_HPS5
Beta-prop_Vps41
eIF2A
Beta-prop_WDR75_2nd
WD40_like
Cytochrom_D1
SGL
Motif
Other DBs
NCBI-GeneID:
125222080
NCBI-ProteinID:
XP_047980468
LinkDB
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Position
4:complement(25580400..25586113)
Genome browser
AA seq
871 aa
AA seq
DB search
MASAVALKKNYRCFQSLQQFYTGGPYAVASDASFIVCACDDTIKVVDSSNSAIRSTIEGD
SEPVTALVLSPDDKFVFSSSHSRQIRVWEVSTLKCIRSWKGHEGPVMGMACHSSGGLLAT
AGADKKVQVWDVDGGFCTHYFKGHKGVVTSLMFHPDPNRLLIFSGGDDSTVRVWDLVKKK
CIATLEKHQSTVTSIAISEDGWTLLTAGRDKVVNVWDLHDYSCKTTVLVYEALEAVCTFD
AASPFALCLSAFAQKIGKKISSSSVQFLTVGERGIVRIWNSDGAVCLFEQKSSDLAVSSE
KEEVKRGFTSAMMLPLGQGLLCATADQQFLIYDLDKNVDDGLNLALRKRLIGYNEEIADM
KFLGDEEQYLAVATSVEQVRVYDLASMSCSYILTGHSDVIPCIDTCVSASGKTLIVSGSK
DNTVRLWEAESQRCIGVGIGHMGAIGAVAFSKKNRNFCVSGSSDRTLKIWSFDGVSDDAG
EASNLKAKAVVAAHDKDINSLAVSPDDSLVCSGSQDRTAAIWRLPDLVSVVVLKGHKRGI
WSVEFSPVDHCVITASGDKTIKLWAISDGSCLKTFEGHTSSVMRASFITRGTQFVSCGAD
GLVKLWTVKTQECLATYDQHEDKIWALAIGKKTEMLATGGVDAVVNLWHDSTAAEKEEAF
RKEEEDVLKGQDLENAVLDRDYTRAVRLAFELRKPHKLFELFSEVIRKPNADVQIEKALR
PFDKEEVRLLLEYVREWNTKPKLCHIAQFVLHRLFTILPPTDLVEMKGIGELLEGLIPYS
QRHYTRIDRLQRSTYLLDYTLTGMSVIEPEANATEPRKNEDLGESAREEGEDYPEPKDAS
TKKRKTRKSQDKKQKKSKVAYVSTATISSPA
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggcggtggcgctcaagaagaactaccgatgcttccaatctctgcagcagttc
tacaccggtggtccctacgccgtcgcctccgacgcctctttcatcgtttgcgcctgcgac
gacaccatcaaggtcgtcgattcttctaactccgctatcagatcaacaatcgaaggcgac
tccgagcccgtgaccgccctcgtcctcagccccgacgacaagttcgtcttctcgtccagc
cacagccgccaaattcgagtctgggaggtctccacgctcaaatgcattcgctcgtggaag
gggcatgaagggccagtaatgggaatggcttgccattcctcaggaggattgttggcaaca
gctggtgctgataagaaagtgcaagtgtgggacgttgatggaggcttctgcacacattat
ttcaaggggcataaaggggtggtaaccagcctcatgttccacccagacccaaaccggtta
cttattttctccggtggggacgacagcactgttagggtatgggaccttgtgaagaaaaag
tgtatcgcaacactagaaaaacatcaatcaacagttacttcgattgcaatatctgaagat
ggatggacgttgctgactgctggaagagacaaggttgtgaatgtatgggacctgcacgat
tatagctgtaaaactactgtactggtgtatgaagcgctagaagccgtgtgtacatttgat
gcggcatccccttttgccctatgtttgtcagcatttgctcagaaaatcgggaagaagatc
agttcatcatctgttcagtttttaacagttggtgaacgtgggatcgtgcggatatggaac
tctgatggggcagtgtgcctctttgagcagaaatcttcagatttagcagtcagctcagag
aaagaagaagttaaaagaggttttacctctgcaatgatgcttccgttaggccaagggttg
ctctgtgctacagctgaccaacagtttcttatttatgatttggataaaaacgtcgatgat
ggtttgaacttggccctgaggaaaagactaattggatacaatgaagagattgcagatatg
aagtttctgggtgacgaggaacaatatctcgcagttgctacaagtgtcgaacaggtaaga
gtgtatgatctggcatcaatgtcatgttcctacatattgactgggcatagcgatgtgatt
ccatgcattgacacctgtgtgtcagcttctggaaaaacacttatcgtttcgggaagtaaa
gataacactgttagattgtgggaagccgaaagccaacgctgcattggtgttggcataggt
cacatgggtgctattggtgctgttgctttctcgaagaaaaacaggaacttttgcgtcagt
ggtagtagtgatcgcacattgaagatttggagctttgatggagtgtcagatgatgctgga
gaagcttccaatttgaaagcaaaagcagtagtggcagcccatgacaaagatataaactcg
ttggcagtttcacctgatgatagccttgtttgcagtggttcccaggatcgtacagcagcc
atatggaggcttcctgatctggtctcagttgttgtacttaaaggtcataagagaggtatt
tggtctgtggagttctctccagtggatcactgtgtcataacagcatcgggtgacaagaca
atcaaactatgggccatctctgatggctcctgtctaaaaacatttgaaggacacacatca
agtgtcatgagagcttcatttattacacgggggacccaatttgtttcttgtggagctgat
ggtttggtgaagttatggacagtcaaaactcaagaatgcttggccacttatgatcaacat
gaagacaagatatgggcattggcaattggtaagaagacggaaatgcttgctacaggtggt
gttgatgcagttgttaatttgtggcatgactctacagctgcggaaaaggaggaggccttc
cgtaaagaagaagaagatgttttgaaagggcaagatttggaaaatgctgtattagatcgt
gactacactagagccgtccgacttgcatttgaacttcgcaagcctcacaaactttttgaa
ttatttagtgaagtcatcaggaagccaaacgcggacgttcagattgagaaggctcttcgt
ccttttgataaggaagaggttcgtctactcttagaatacgtaagagaatggaatacgaaa
ccaaaactctgccatatagcacagtttgttctgcatcgcctatttaccatcctccctccg
acagatctagtcgagatgaagggcattggagaactgcttgaaggccttattccgtattca
cagagacactacaccagaatcgataggttgcaaaggagcacatacctcttggactatacc
ctaacgggaatgtctgtcatcgaacccgaagcaaacgccacagaaccaagaaaaaacgag
gatttaggagaatcagctagggaggaaggcgaggactacccagagcccaaagatgcatca
acaaaaaagcgaaaaacacgaaagtctcaagataaaaagcagaagaagtcgaaggtggcg
tatgtgagcacagcgaccatatcctctccagcctaa
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