Salvia hispanica (chia): 125222183
Help
Entry
125222183 CDS
T09851
Name
(RefSeq) F-box protein SKP2A-like
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
shis
Salvia hispanica (chia)
Pathway
shis04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125222183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shis04121
]
125222183
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
125222183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF7885
LRR_6
F-box-like
LRR_At5g56370
LRR_4
F-box
LRR_Zer-1
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
125222183
NCBI-ProteinID:
XP_047980629
LinkDB
All DBs
Position
4:complement(12909540..12911598)
Genome browser
AA seq
340 aa
AA seq
DB search
MEIIEWNDIPVELLLRILSLLDDRTAVVASAVCRGWRDSLSWGITRLSLSWCKRNMNSLV
LSLAPKFTKLQSLILRQDVPQLQDDAVEEITSHCHELRELDLSKSFLLTDRSLYAIARGC
PDLEKLNISGCSAFSDSALGYLTGCCRKLKFLNLCGCVGTASDRALKSIGYNCNELQYLN
LGWCDRVGDEGIMNLAYGCPDLRAIDLCGCVLITDDSVVALANSCRHLRSLGLYYCQNIT
DRAMYSLAQSRMKGKHEVSWASVKNRYEEEEEGLTNLNISQCTALTPPAVQALCDSFPAL
HTCSGRHSLIISGCLNLTSVHCACAVQAHRGSTALPRLAH
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggagattattgagtggaatgatattccggtggagcttctgttgaggattctgtctctg
ctagatgatcggacggctgtggttgcttctgccgtctgccgcggctggagagattccctt
tcttggggcatcactcgtctctctttatcttggtgcaagagaaacatgaacagtctggtc
ctttctctggctcccaaattcacaaaactgcaatctctgattctacgacaagatgtacct
cagctccaagacgacgctgttgaggaaatcacgagccattgccacgaactgcgagagttg
gatctcagcaagagtttccttcttacagaccggtctctgtatgccatagctcgtggctgt
cccgatctcgagaagctcaatataagtggctgctcggccttcagtgactctgccctcgga
tatctaactggctgttgcagaaaattgaaatttctaaatctttgtgggtgtgttgggact
gcctctgatagggccctaaagtccattggatacaactgcaacgaattacaatatttgaac
cttggttggtgtgatcgcgttggtgatgaaggcattatgaacttagcctacggctgcccc
gacctcagagctatcgacttgtgcggatgtgttctcataactgacgacagcgtagtagct
ctggccaacagctgccgtcatctgaggtccctaggtctgtactactgccagaacatcacg
gatcgagccatgtactcgctggcacagagtcgaatgaagggaaagcatgaagtgtcgtgg
gcgtctgtgaagaacaggtatgaggaggaggaggaaggccttacgaatctgaatatcagc
cagtgcactgccttaacgcctccagcagtacaggcgctgtgcgactcatttcctgctctc
cacacttgctcgggtcgtcattctctgatcatcagcggctgtctcaacttaacatcggtg
cattgtgcttgtgctgtccaggcacaccgtggctcgactgcactgcctcgcttagctcac
tga
DBGET
integrated database retrieval system