Salvia hispanica (chia): 125222240
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Entry
125222240 CDS
T09851
Name
(RefSeq) ATP-dependent helicase BRM isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125222240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125222240
03036 Chromosome and associated proteins [BR:
shis03036
]
125222240
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125222240
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
125222240
Chromatin remodeling factors
BAF complex
125222240
PBAF complex
125222240
GBAF(ncBAF) complex
125222240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Bromodomain
AAA_14
Motif
Other DBs
NCBI-GeneID:
125222240
NCBI-ProteinID:
XP_047980705
LinkDB
All DBs
Position
4:33633074..33644851
Genome browser
AA seq
2229 aa
AA seq
DB search
MQSGGGAQQGGGGGGHGRTNAASASASLSPSSSAGSAFDQQQQQRQQQQHQQQRQQQQHQ
QQRQSRSQQFMKRPEGNDALLAYQAGTIHGPLGAGNFSAASGSMQLPQQPRKFIDLGQQH
GSPNNPDQSHNRSQGVELQMLNPMQQAYMQYAFQSAQQKSTLGMQSQQQVRPAMFGSLGK
DQEMRMANMKMQELISMQGANQSQGSSSKKPSEQVAQSDKHADNSHRPLLDQRSDTKPNY
PPLGGQGIQPAPMQAPQSQQNIMSMTNNQMAMAAQMQSMQALALERNIDLSHPANANVVA
QLIPLMQSRMAAQQKANENSTGLPSGSFNKQHVTSPPVGNESSPHGNSSSDVSGQSGSSK
ARQAVSPSTLGVNSNAAPPNNSSTISAQQFSVQHFPHRQQSSLGHGMPPIQPSQSPGNPN
EGVDSFLAKTSVAESSQAQNARQPNRSPQSATPSNEGDVGNPSTSQGGPSSQLRQLHTGF
TKQQLHVLKAQILAFRRLKQKGDVTLPRELLQAIAPPPLDLQMQQVLSPPANAGKDKLSG
ETVEEQTKHMEFSEKGAHDAKSVAGVVNMKTEGSGDGRAAAAAASMQNSVSAAKEQRFVG
PPGKEEPQYIGSSGKCEQESEPGNQNTPVRNDVAVDRGKGIATQSSASDPVQVKKPIQAS
NTPQPKDAGSTRKYHGPLFDFPIFTRKHETLGSSMMNNNSNLTLGYDIKDLFADEGREIH
KRKRAERIGKIDEILGVNLERKRIKPDLVTRLQIESKKLQLAECQARLRDEIEQQQQEIM
AMPDRPYRKFVRLCERQRQDLNRQSQANQKATREKQLKSIFHWRKKLLEAHWAFRDARTA
RNRGVHKYHEKMLREFSKLKDDDRNKRMEALKNNDVERYREMLLEQQTNVPGEAAERYAV
LSSFLSQTEEYLHKLGSKITATKNQQEVEEAAHAAAAAARAQGLSEEEVRAAAACARDEV
SIRNRFSEMNAPRDSQSVNKYYNLAHAVNERVIRQPSMLRAGTLRDYQLVGLQWMLSLYN
NKLNGILADEMGLGKTVQVMALIAHLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVS
CIYYVGGKDQRAKLFSQEVLAMKFNVLVTTYEFIMYDRTKLSKIDWKYIVIDEAQRMKDR
ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKE
GPAHEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLKCRMSAIQSAI
YDWIKSTGTLRVDPEDEHRKCQKNQNYQAKTYKTLNNRCMELRKACNHPLLNYPYFSDFS
KDFLVRSCGKLWVLDRVLMKLQRTGHRVLLFSTMTKLLDIMEEYLQWRRLVFRRIDGMTS
LEDRESAIVEFNRPDTDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH
RIGQTREVKVIYMEAVVGKISSHQKEDEFGSGGVVDSDDDLAGKDRYVGSIESLIRNNIQ
QYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLHEVNRMIARSE
EEVELFDQMDEELDWAEDMTRYDQVPDWLRANTQEVNTTIAKLSKKPSKNAVYGGMQPPG
EVASEISERRRGRPKGKTPVYTELDDENGEFSDASSNDRNGYSVQEEDDGDIGEFEDDES
TEAPGVNKDQSEEDAPVSADGYEYQRALDNVRNNSILDEAGSSGSSSHSRKLMRMVSPSV
SSQKFGSLSALDGRPGSRSKKLADELEEGEIAVSGDSPMNQQHSGSWIQDRDEGEDEQVL
QPKIKRKRSIRLRPRPVRTEEKPSDRSSFRPGDPTMLPVHMDNKYKTQASDDRSHKVLGD
TSSMKSEKIDSSTKNKRNLPSRRNTANVQSTLRSGRVNYGPAVAYDSSEHLTENLDTKVV
KGPKTSGPKMSEVVLRKCKTVISKLQRRIDYEGHQIIPQLTELWKRNDYASGDGDCLLDL
RKIHNRVDKSEYSGVMGFVSDVQLMLKSSMQYFGFSYEVRSEAKKVHDLFFDIIGVAFSD
TDFREARSSMSFTAPVSTPATGPSSRQFPSAQGKRQKSVKDVDSENTPFPKTQTRTPIHT
VESSKARNLMPHKDSRLGSSSSRDLGQPDDARPFTHPGDLVICKKKRKDREKSGTKSGNG
SAGPLSPTGIGRVMKSPGSVSGAKDIGSSQHGWGPLSPQQGNSSGGSVGWANPVKRMRTD
AGRRRPSHL
NT seq
6690 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccggtggtggggcccaacagggcggaggcggcggcggccatggccggactaat
gccgcatcggcctctgcttctctgtccccatcgtcctccgccgggtccgcatttgatcag
cagcaacagcagaggcagcagcagcagcatcaacagcagagacagcagcagcaacatcaa
cagcagagacagtcaaggtctcaacagtttatgaagagacctgaagggaatgatgccctt
ctagcgtaccaagctggcacgatacatggacccctgggggcgggcaatttttctgccgca
tctggctccatgcagctgcctcaacagcccaggaagttcattgatttgggccagcagcat
ggttcccctaataatccggatcaaagtcataatagaagtcaaggtgttgagctacaaatg
ttgaatccgatgcaacaagcttatatgcagtatgcatttcagtcagcccaacagaaatct
acattggggatgcaatcacagcagcaggtgagaccagcgatgtttggttctcttggcaaa
gatcaagaaatgaggatggcaaacatgaaaatgcaagagctgatatccatgcaaggagca
aatcagtctcagggttcctcctccaagaaaccctctgagcaggttgctcagagtgacaaa
catgcagataacagtcatcgccctttgctcgatcagagaagtgataccaaaccgaactat
cctccattaggtggtcagggaatccaacctgcacctatgcaagctccacaatctcagcaa
aatatcatgagcatgacaaacaatcagatggctatggctgcacagatgcagtcaatgcag
gcactggctcttgagcgtaatattgatctgtcacaccctgcaaatgcaaatgtggttgca
cagcttatcccactaatgcagtctaggatggctgctcagcaaaaagctaatgaaaatagt
actggtttgccttctggatctttcaacaaacagcatgttacctcaccgccagttggaaac
gaaagttctccccatggtaattcctcaagtgatgtgtcaggacaatctgggtcatctaaa
gctaggcaggcagtttcacctagtactcttggtgtgaattccaatgcagctccacctaac
aattctagcaccatttctgcccaacagttctctgtgcagcattttccccataggcagcaa
tcctctcttggtcatggaatgcctcctattcagccttcacagtcaccagggaatccgaat
gaaggggttgatagttttcttgcaaaaacttcggtagcagaatcttctcaggcgcaaaat
gccagacagcctaatcggtctcctcaatctgcaactccatctaatgaaggtgatgtgggt
aatccatcaacatctcagggtggacccagttcgcagttgagacaattgcacactggtttc
accaagcagcagctgcatgttcttaaagcacagatacttgcatttaggcgcctgaagcag
aaaggcgatgtaactttgccacgtgaactgctccaagctattgctcctccaccacttgat
ttacagatgcaacaggtgctttcacctcctgcaaatgctggaaaggacaaattatctggt
gaaactgtagaggagcagaccaaacatatggagttcagtgagaaaggggctcatgatgca
aaatcagtagctggagtagttaatatgaaaactgaaggttcaggagatggtagggctgct
gctgcagctgcgagcatgcagaactctgtttctgcagcaaaggagcagaggtttgtgggt
cctcctggaaaagaagagccgcaatatattggtagttctgggaaatgcgaacaggagtct
gaaccgggcaatcagaacactcctgtcagaaatgatgttgctgtagacaggggtaaagga
attgcaacacagtcaagtgcttcagatccagtgcaggtcaagaaacccattcaagcaagt
aatacaccccaacctaaggatgctggttcaacacgaaaatatcatgggccgttatttgat
ttccccattttcactagaaaacatgagacccttggatcgtctatgatgaacaacaatagt
aacttgactttaggttatgatatcaaagatctttttgctgatgaaggcagggagattcac
aaaaggaaaagggcagaaagaattgggaaaattgatgaaatacttggtgttaacttagag
aggaagagaattaaaccagatcttgttactcggctacaaattgagtcaaaaaaacttcag
cttgctgagtgccaggcacgcttgagggatgagattgagcaacaacaacaggaaataatg
gctatgcctgatagaccatatcggaaattcgttcgactttgtgaacgtcagcgtcaggat
cttaacaggcaatcacaggccaatcagaaggcaactagggagaagcaactaaaatccatt
ttccattggcgcaaaaagcttctcgaggcacattgggctttccgtgatgctcgaactgcc
cggaataggggagtacataagtatcatgaaaagatgttgagggagttctccaaactgaag
gatgatgaccgtaataaaaggatggaagccttgaaaaataatgatgtggaaagatataga
gagatgcttctggaacaacagactaatgtacctggggaggccgcagaaagatacgctgtt
ctctcatcattcttaagtcaaactgaggagtatctacacaaattgggcagtaaaataaca
gccactaaaaatcagcaggaggttgaggaggcagctcatgcagcagctgctgctgcacgt
gcccagggtctctcggaagaagaagttagagctgccgctgcttgtgcgagagacgaagtc
tcgataaggaaccggttttcagagatgaatgcaccaagagatagtcaatctgttaacaag
tactacaatctggcacatgctgtgaatgaaagggtcataagacagccttcaatgctacga
gctggaactctacgagactatcaacttgttggtctgcagtggatgctatcattatacaat
aataaattaaatggaattttggcagatgagatgggtcttggcaaaactgtgcaggtgatg
gccttgattgctcatttgatggagttcaaaggaaattatggccctcatcttattattgtt
cccaatgctgtgcttgtcaactggaagagtgaattgcatacttggcttcctagcgtttcc
tgtatatattatgttggtgggaaagaccaaagggcgaaattgttttctcaagaagtgcta
gccatgaagtttaatgtccttgtgacaacctatgagttcatcatgtatgatcgtacaaaa
ctttcaaaaattgattggaaatatattgtaattgatgaagcacaacggatgaaggacaga
gagtcagtattagctcgtgaccttgataggtatcgctgccaaaggcgtttgcttcttaca
gggacaccattgcagaacgatcttaaagagctttggtctcttttaaacctactactccca
gaagtttttgataatagaaaagcatttcatgattggttctctcaaccattccaaaaggaa
gggcctgcacatgaagatgactggctcgagacagagaagaaggtgataattatccataga
ctacatcaaatattggaaccgtttatgcttcggcggcgtgttgaagatgtagaaggatca
cttcctccaaaggtctcgattgttttgaaatgtcgaatgtctgcaatacagagtgccatt
tatgattggatcaaatcaactggcactctcagggttgaccctgaagatgaacatcgcaag
tgtcaaaagaaccaaaattatcaggctaaaacttacaaaactctaaacaatagatgcatg
gagctacggaaagcttgtaaccatccattgctaaattacccttatttcagtgacttctca
aaggatttccttgtgaggtcttgtggaaaattgtgggttctggatagagttttgatgaag
cttcagagaacgggacacagggtactgctctttagtaccatgaccaaacttcttgatata
atggaggaatatttgcagtggcgaaggcttgttttcagaagaattgatgggatgactagc
ttggaagaccgtgaaagtgctatcgttgagtttaatcgaccagacaccgattgttttatc
ttcttacttagcattcgtgctgctggacggggtctcaatctgcagtctgctgacacagtg
atcatatatgatccggatccaaacccaaaaaatgaggagcaggctgttgctcgtgcccac
cgtattgggcagacgagggaggtgaaagtcatttacatggaagctgtggtcggcaaaata
tccagccatcaaaaagaggatgaattcgggagtggaggagtagttgactccgatgatgac
cttgctggaaaggaccggtatgtgggttcaattgagagcttgattcggaataatattcag
cagtataagattgacatggctgatgaagttataaatgctgggcggtttgaccagaggact
acacatgaagagaggcggctaactttagaaacacttttgcatgatgaagaaagataccaa
gaaacagttcacgacgttccttctcttcatgaggtaaaccgtatgattgctaggagtgaa
gaagaagtggagctttttgatcaaatggatgaagaacttgactgggcagaggacatgact
cgatatgatcaggtccctgattggcttcgtgctaatacacaagaagtaaatactaccatt
gctaagttatcaaagaagccatcaaagaatgctgtatatggtggaatgcaacctcctggt
gaagtggcttctgagatttctgagaggaggagagggcggcctaagggaaagactcctgtt
tatactgaattagatgatgaaaatggagaattttctgacgcaagctccaatgatagaaat
ggatattctgttcaagaagaagatgatggagacattggggagtttgaagatgatgaatcc
actgaagcacctggagtcaataaagatcaatcagaagaagatgctcctgtttctgctgat
ggatatgaataccaaagagctttggataacgtcagaaacaatagcatacttgatgaagct
ggctcttctgggtcctcttcgcatagtaggaagttaatgcgcatggtctcaccttccgtg
tcctctcaaaagtttggatcactttctgcattagatggcaggcccggctcccgatcaaag
aaattggcagatgaattagaagaaggtgagattgctgtatctggagattctcctatgaat
cagcagcattctggtagctggatccaagatcgtgatgaaggtgaagatgaacaggtcttg
caacccaagataaaacgaaaacggagtattcggcttcgcccacggcctgttaggactgaa
gagaagcccagtgacaggtcatcttttcgtcctggtgatcctactatgttaccagtacac
atggataataaatacaagactcaagcaagtgatgaccgttcccataaagttcttggagat
actagttcgatgaaatcagagaaaattgattcatctaccaagaacaaaagaaatctacca
tcaaggagaaatacagctaatgtgcaaagtactcttagatctgggagagtgaactatggg
cctgctgttgcatatgattcctctgaacatcttacagaaaacttggacactaaagttgtg
aaggggcctaaaactagtggccctaagatgtccgaggtcgttctgagaaagtgcaagact
gttataagcaagctccagagaagaatagattatgaaggtcatcaaataataccacagcta
actgagctgtggaaaagaaatgattatgccagtggagatggtgattgccttttggatttg
agaaagattcataaccgtgttgacaaatctgagtacagtggagtcatgggatttgtgtct
gacgtgcagcttatgttgaagtctagcatgcagtatttcggtttttcatatgaggtgagg
tcggaggcgaagaaagtccatgacctctttttcgatataattggggtagcattctcagat
actgactttcgagaagccagaagttccatgtctttcactgctcctgtttccacgccagcc
accggtccatcttcacgacagtttccttctgctcaggggaagcgccagaaatcagtcaaa
gacgtggattcagaaaatactcctttccctaagacacagacccgcacacccattcacact
gtcgagagttctaaagccaggaacttgatgcctcacaaggattcgaggctcggaagcagc
agcagtcgggatcttggccaaccagatgacgctcgccctttcactcacccaggagatctc
gttatctgcaaaaagaagaggaaagacagggagaaatcgggtacgaagtctggaaacggt
tcagcaggtccattgtcacctacaggcattggacgtgtgatgaagagtccagggtcagtc
tcaggcgctaaagatattggctcgagccaacatggctgggggcccctttcccctcaacaa
gggaacagcagcggtggctccgtcggctgggcgaatcctgtaaagagaatgagaactgac
gctggaaggcggcggcctagccatttatga
DBGET
integrated database retrieval system
