Salvia hispanica (chia): 125222430
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Entry
125222430 CDS
T09851
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125222430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125222430
03110 Chaperones and folding catalysts [BR:
shis03110
]
125222430
03029 Mitochondrial biogenesis [BR:
shis03029
]
125222430
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shis04147
]
125222430
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
125222430
Messenger RNA biogenesis [BR:
shis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
125222430
Chaperones and folding catalysts [BR:
shis03110
]
Heat shock proteins
HSP60 / Chaperonin
125222430
Mitochondrial biogenesis [BR:
shis03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
125222430
Exosome [BR:
shis04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
125222430
Exosomal proteins of other body fluids (saliva and urine)
125222430
Exosomal proteins of breast cancer cells
125222430
Exosomal proteins of colorectal cancer cells
125222430
Exosomal proteins of bladder cancer cells
125222430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
125222430
NCBI-ProteinID:
XP_047980992
LinkDB
All DBs
Position
4:48864195..48867589
Genome browser
AA seq
589 aa
AA seq
DB search
MASANTISTASILPSSSKQNGLKNRKVKQLLQQGQKQSRNRFVVKANAKEIAFDQKSRSA
MQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIRE
VASKTNDSAGDGTTTASVLAREVIKLGLLSVTSGANAVAVKKGIEKTVQGLVDELEKKAR
PVKGRDDIKAIASISAGNDEIIGTMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEID
RGYISPQFVTNPEKLTVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTG
EALATLVVNKLRGVVNVAAIKAPGFGERRKALLQDIAILTGAEYQATDLGLRVEDTDIDQ
LGIARKITISKDSTTVIADAASKDELQARIAQLKRELSETDSVYDSEKLAERIAKLSGGV
AVIKVGAATETELEDCKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTFVPEIKDKLDDA
DERLGADIIQKALVAPAALIAQNAGVEGEVVVEKVRANEWEFGYNALTDSYENLVESGVI
DPAKVTRCALQNAASVAGMVLTTQAIVVEKAKPKAAAAAGQPPAGSYAV
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgcaaacacaatctcgaccgcctccatcctcccttcctcatctaaacagaat
gggttgaagaataggaaggtgaagcagctattgcagcaggggcagaagcagtccaggaat
cgctttgtggtgaaggccaatgctaaggagatcgcctttgatcagaaatcgcgctctgca
atgcagtccgggatcgataagctcgccaacgctgtcggcctcactcttggtcccagggga
aggaatgttgtcttggatgagtttgggtcccctaaggtggtcaatgatggggttacaatt
gcacgtgccattgagttgcctgatgctatggaaaatgccggcgctgctctgattagggag
gttgctagcaagacaaatgattccgccggtgatgggactaccactgcatctgttcttgca
cgtgaagttatcaaacttggcctgctcagtgttacatcgggtgccaacgcagttgctgtg
aagaaaggaattgagaaaaccgtacagggtttagttgatgagctcgaaaagaaggctagg
ccagtcaagggccgggatgatattaaagccattgcatccatctctgctgggaatgatgag
ataattgggacaatgattgctgatgcgattgacaaggttggaccggatggcgttctgtcc
attgagtcatcatcctcctttgagaccactgtcgatgtagaagaaggaatggagattgac
agaggatatatctctccgcaatttgtcacaaacccagagaagctgactgttgagttcgag
aatgctagggtattagttacagaccagaagatctcagcaatcaaggacatcattcctttg
ttagagaaaaccacccagttaagggcacctttactcattattgctgaagatgtcactgga
gaagctttggcaaccctcgttgtaaacaagctccgaggtgtcgtaaatgtggcagccatc
aaagcccctggatttggagaacggaggaaagctcttcttcaagatattgccattttgact
ggggctgagtatcaagctactgatttgggattgcgtgtggaagacactgatattgaccag
ctgggtattgctagaaaaataaccatctccaaggactcgactacagtaattgccgatgct
gcatccaaggatgagctgcaggctagaattgctcaacttaaacgggagctttctgagact
gattctgtttacgactccgagaaacttgctgagagaattgccaagctgtctggtggtgtt
gctgttatcaaagttggtgctgcaacagagactgagcttgaggactgcaagctccgtatt
gaagatgccaaaaatgcaacatttgctgccattgaggaaggaattgtgcccggtggcgga
gctgcgttggtgcatctctcaactttcgtcccagagatcaaggacaagcttgacgatgct
gatgagcgacttggtgctgatatcatacaaaaggctttagtagcgccggcagctttaatt
gcccaaaatgctggggtggaaggcgaggtagttgtggagaaagtgagggccaatgaatgg
gagtttggttacaatgcgcttactgattcgtacgagaacttggtagagtctggagtgatt
gacccagccaaggtgacgagatgcgccctgcaaaacgcagcttcagttgctggaatggtg
ctcacaacacaagccattgtggtcgagaaagccaagcctaaggcagcagccgctgccggt
cagccacctgcaggcagctatgcagtctaa
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