Salvia hispanica (chia): 125222448
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Entry
125222448 CDS
T09851
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
shis03015
mRNA surveillance pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125222448
09122 Translation
03013 Nucleocytoplasmic transport
125222448
03015 mRNA surveillance pathway
125222448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125222448
03041 Spliceosome [BR:
shis03041
]
125222448
03009 Ribosome biogenesis [BR:
shis03009
]
125222448
03012 Translation factors [BR:
shis03012
]
125222448
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125222448
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125222448
mRNA cycle factors
Stress granule specific factors
125222448
Spliceosome [BR:
shis03041
]
Complex C
Other components
EJC/TREX
125222448
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
90S particles
Helicases
125222448
Translation factors [BR:
shis03012
]
Eukaryotic type
Initiation factors
eIF-4
125222448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
Helicase_RecD
Utp25_C
PhoH
Motif
Other DBs
NCBI-GeneID:
125222448
NCBI-ProteinID:
XP_047981026
LinkDB
All DBs
Position
4:complement(12101862..12105452)
Genome browser
AA seq
408 aa
AA seq
DB search
MATTAAQRGGGGRRAMEEDDAKLVFETSKGVEPIMSFDEMGIKEELLRGIYNYGFEKPSA
IQQRAVLPIISHRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELASQTE
KVILAIGDYINVQAHACVGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRAIKI
LILDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPNEILEITSKFMTDPVRILVKR
DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTAKMRENNFT
VSSMHGDMPQKERDAIMSEFRSGQTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcgactacggcggctcagagaggcggcggggggcggagagctatggaggaagacgat
gcgaagctcgtgttcgaaacgtcgaaaggtgtggagccaatcatgagcttcgacgagatg
ggaattaaggaggagctcctccgaggaatctacaattacggcttcgagaagccttccgcc
atccaacagcgcgcagttcttcctattatctcccaccgtgacgtcatagctcaggcgcaa
tccggtactggaaagacttcaatgattgccctaactgtttgccagattgtcgataccaag
tcctccgaggtccaagccttgattttatctcctactagagagttggcttctcaaacagag
aaagtaatactggcaattggtgactacataaatgtacaagctcatgcttgtgttggaggc
aaaagtgtgggtgaggatataagaaaactagagcatggagttcaggtggtatcaggtact
cctggtagagtttgtgacatgatcaaaagaagaactttgcgtactagagcaatcaaaata
ttgattctggatgagtctgatgaaatgttgagcaggggatttaaggatcagatttatgat
gtctacagataccttccacctgaccttcaggttgtcttaatctctgccaccctcccaaat
gaaatattggagattacaagtaaattcatgactgatccagttcgcatattagtaaagcgt
gatgaattgaccctggagggtatcaagcaatttttcgttgcagttgaaagagaagaatgg
aaatttgatacgctgtgtgatttatacgacacacttaccataacccaggcagttatattt
tgcaacacaaagcgcaaggttgattggctgacagcgaaaatgcgtgagaataactttact
gtctcatccatgcatggagatatgcctcaaaaggagcgagatgcgattatgagtgaattc
cggtctggtcaaactcgtgtgcttatcacaacagatgtttgggctaggggattggatgtt
caacaggtttctctggtgattaattatgatcttccaaacaatcgagagctctacatccat
agaatcggacgatctggtcgttttgggcgaaagggtgttgccataaactttgtcaaaagt
gatgacatcaagatccttagggatatcgagcagtattacagtacacagatcgatgaaatg
ccaatgaacgtggccgatttgatttaa
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integrated database retrieval system
