Salvia hispanica (chia): 125222478
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Entry
125222478 CDS
T09851
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125222478
03036 Chromosome and associated proteins [BR:
shis03036
]
125222478
Spliceosome [BR:
shis03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
125222478
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
125222478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
RRM_1
TPR_14
Lsm_interact
HAT_Syf1_M
MOSP_C
Motif
Other DBs
NCBI-GeneID:
125222478
NCBI-ProteinID:
XP_047981074
LinkDB
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Position
4:16844208..16855369
Genome browser
AA seq
842 aa
AA seq
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MADSETLVTAPSTSLEEDSNANDVLMPDAKNATEGSDSDSDSESESDSDSEDESQAKAQI
EALETQLYNNPSDYDTHVQYIKALRKQGELEKLNQAREAMSSLFPLTPDMWREWAKDQTT
ISSSLEALPQIEKLYERGVSDYMSVDLWCDYLNFVQEHDPSVKECSAVGISKARNLFERA
LTAAGLHVDGGHHIWELYREFEQAIIFIIDETDSAAKEKQIQRVRNLFHRQLSIPHTDLK
STLAAYQAWEADQGRLTNDNNKDLDDLPSHVVSVYQKALEMLNDRAHLEENISKSNTDSE
KLQDFMTYLKFEHSSGDPARIQILYERAIAVFPVSADLWLDYTQYLDKTFKTARIVRDSY
YRATRNCPWVGELWVRYLLALERCHASEEELSTVFERSLLCTFSGFDEYLNVFLTRADGL
RRRMSSSTAVKDEVDYAILRDIFQRASDYLSPHLKNTESLLRLHSYWARLELKYGKDLTA
ARGVWESLLKICGSMMEAWQAYIAWETETGNINEGRSLYKRCYSKRFPGTGSEDICHSWL
RFEREYGSLEEFDIAVQKVSPRLQELQLFRLQQESKNVIPAANDRENPSKKSAREKRKLT
SHSVEEQPPAKHHKSAAHDSNKKIQNDKGQPRQSAEPSEAAELKNKNAERAKNQEMQDKS
KNSIQFNDQCTAFVSNLNLQATADDLHNFFADAGGVVAVRLLKDKFTRKSRGLAYVDFSD
DAHLAAALQKNKQIFMGKKLSILKSDPKQGRKKEVAGRSGRAEHGRSDTRETPKGKMDIQ
PQSPTSGQGDVKLKGRNTFAVPRNVKPLGWSSRSTPPSDAANEQEADNPKSNDEFRKMLM
KS
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggcggattctgaaaccctagttactgctccatctactagcctagaagaagacagcaac
gctaacgatgttttgatgcccgacgctaagaacgctactgaaggctccgactctgactcc
gactcagaatccgaatcggactccgactctgaagatgaatcccaggcgaaggctcaaatt
gaagcactggaaacacagctctacaataatccatcggattacgatactcatgtccaatat
atcaaagctctgcggaagcagggggagttagagaagctgaatcaagcaagggaagcaatg
agttcgttgttcccactgactcctgatatgtggcgcgaatgggccaaggatcaaactact
attagctcctcgctagaagcactccctcagatcgaaaagctgtatgaacgaggagtgtct
gattatatgtctgttgacctttggtgtgactacttaaattttgtacaagaacatgatcct
tctgtcaaagaatgttctgctgtgggcatctcgaaagcaagaaatctgtttgagcgtgca
cttactgctgctggcttgcatgttgatggaggtcaccacatatgggaactgtacagagaa
tttgaacaagcgattatttttattattgacgaaactgactctgcggcaaaagaaaagcag
atccagcgcgtgcgaaatttatttcatcgtcagttatctattccccataccgacctaaaa
tcaacacttgctgcgtaccaggcctgggaagctgatcaggggcgtctcactaatgataac
aataaagatttagatgaccttccatctcatgttgtctctgtatatcaaaaggcattggag
atgctgaatgaccgagctcatctagaagaaaatatttccaagagcaatacagattctgaa
aaacttcaagatttcatgacttacttgaaatttgagcactcatctggtgatccagcacgt
atacagatcttgtatgaacgagctatagccgtgtttcctgtatctgctgatctatggctt
gactatacacagtatctggataaaacatttaagactgccagaattgtgagggacagctat
tatagggccacaaggaactgtccttgggtgggtgaattgtgggttcgatacttgcttgcc
ctggaacgttgtcatgcttctgaggaagagttatcaacagtatttgaacgatcactgctg
tgcactttttcaggatttgatgagtacctaaatgtattcctcacaagagccgatgggtta
aggcggagaatgtcttcatctacagctgtgaaggatgaagtggactatgcaattttaagg
gatatatttcagcgtgcatcagattacctatccccacatctcaaaaacacagaaagctta
cttcgcttgcacagttattgggctcgactggagttgaagtatggaaaagatttgactgcg
gctcgtggcgtctgggagagcttgcttaaaatatgtgggtctatgatggaagcttggcaa
gcttatatagcatgggagactgagacgggcaatataaatgaaggcagatccctttacaag
agatgctacagtaagagattccctggaacaggctcagaggatatttgccattcatggctg
cgctttgagagagaatatggatcactggaagagtttgatattgctgttcaaaaggtgtct
cctcgtcttcaagagttgcagctgtttaggttgcaacaggagagcaaaaatgtcattcct
gctgcaaatgatagagaaaatccatccaagaaaagtgcccgggaaaagaggaagctaact
tcacattcagtagaagaacagccaccagctaagcatcacaaaagtgcggctcacgattcc
aacaaaaaaattcagaatgataaaggtcagccaaggcaatcagctgaaccaagtgaagct
gctgagttaaaaaacaaaaatgcagaacgtgctaaaaaccaggaaatgcaggataaatct
aaaaactctatccaatttaatgatcaatgcactgccttcgtttccaatctgaatctccag
gcaactgctgatgatctgcataatttctttgctgatgctggtggagttgttgcagttcga
ttactaaaggacaaatttaccagaaaatcaagagggttggcatatgtggatttctcagac
gatgcacaccttgcagcggctttacaaaagaataaacaaatctttatgggcaagaagtta
agcattttgaaatcagatcctaagcaaggcaggaagaaagaagttgctgggcgtagtggc
agagcagaacatggccgatctgacacacgagagactcccaaggggaaaatggacattcag
ccacaatctcccacttctgggcagggtgatgttaagttgaaggggaggaacacatttgca
gtaccaagaaatgttaaacctctcggttggagcagtcgaagcacaccaccatctgatgca
gctaatgaacaggaggccgataaccccaaatctaatgatgagttcaggaagatgctaatg
aaatcatga
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