Salvia hispanica (chia): 125222577
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Entry
125222577 CDS
T09851
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03022
Basal transcription factors
shis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125222577
09124 Replication and repair
03420 Nucleotide excision repair
125222577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125222577
03036 Chromosome and associated proteins [BR:
shis03036
]
125222577
03400 DNA repair and recombination proteins [BR:
shis03400
]
125222577
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125222577
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125222577
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
125222577
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125222577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
NAMPT_N
AAA_11
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
125222577
NCBI-ProteinID:
XP_047981229
LinkDB
All DBs
Position
4:26164499..26169463
Genome browser
AA seq
757 aa
AA seq
DB search
MKFQIEDITVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV
LAKPANPVKLLYCTRTVHEMEKTLAELRFLHDFQVKELGPSARILALGLSSRKNLCVNPR
VVSAENRDSVDAACRKLTASWVRATAIENPDVPKCDFFESYEKAASDAVLPPGVYTLQDL
RVFGKQKGWCPYFLARRMVQFANVVVYSYQYLLDPKVAGIISKEMQRETVVVFDEAHNID
NVCIEALSVNVRTQTLDGASRNLSRMSQEIERLKATDAGRLRAEYNRLVDGLAQRGDLPN
GDTWLANPALPDDILKEAVPGNIRRAEHFLSVLRRFVQYLKGRMQTENVEKEGPVTFVAS
INSQVGIDQKMLKFCYDRLHSLMLTLEITDTDEFLHIQTICDLATLVGTYTRGFSIIIEP
FDERMPHIPDPVLQLCCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
FTISLTRDCICPMVLTRGSDQLPVSTKYDLRSDPGVEKNYGKLLLEMASVVPDGIVCFFV
SYSYMDGIVSSWNESGILKEIMKHKLVFIETHDVVETTLALDNYRIACDSGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGIPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPSWILSHLRDAHLNLSTDMAVHIAREF
LRKMAQPYDKSGAMGKRTLLSQEDLEKMVNGVEEMVF
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccaaatcgaagacataaccgtatactttccgtacgacaacatctacccggag
cagtactcgtatatgctggagctgaagcgcgccctcgacgccaagggccactgccttctc
gagatgccgaccggcaccggaaaaacaatcgcgctcctctctctgatcaccagctacgtc
ctcgccaagccggccaatccggtgaagctcctctactgcacccgcacggtgcacgagatg
gagaaaaccctagccgaattgaggtttctgcacgattttcaggtgaaggaattggggccg
tcggcgaggattctggcgttggggctctcgtcgaggaagaacttgtgcgtcaatcctcgc
gttgtctcggcggagaatcgcgattcggtggatgctgcttgtaggaagctcacggcgagc
tgggttagggcaactgcgattgagaatcctgatgttccgaagtgtgattttttcgagagc
tatgagaaggctgcttctgatgcggtgttgcctcctggagtttatacgttgcaggattta
agggtgtttgggaagcaaaaagggtggtgcccgtactttctagcacgccgtatggttcaa
tttgcaaatgtagtggtatatagttatcagtacctgcttgatccgaaagttgctgggatc
atatcgaaggagatgcagagggagaccgttgtggtgtttgatgaggcccataatattgac
aatgtgtgcattgaggcactaagtgttaatgtgaggacgcagacacttgatggggcgtca
cggaatctgagtaggatgtcccaggagattgagaggttaaaggcaaccgatgctggtcga
ctgcgtgcagagtacaacaggcttgttgatggtttggcacaaaggggggaccttcctaat
ggtgacacatggctagcaaatcctgccttgcctgatgacatactaaaggaagcagtacct
ggaaatataaggcgcgcagagcactttttgtcagttttgcgtaggtttgtacaatatctt
aaagggcgaatgcaaacggaaaatgttgagaaggaggggcctgttacatttgttgcatca
atcaattcacaagtaggaattgaccagaaaatgctgaagttttgttatgatcgacttcac
tctcttatgttaaccttggagattaccgacacagatgaatttctccacatccaaacaatc
tgtgatctggcaactcttgtggggacctacactcgtggattttctattataattgaacct
tttgatgaaaggatgccacacatacctgatcctgttcttcagctttgttgtcatgatgct
tctcttgccataaagcctgtatttgagcgatttcagtcagttgttattacatctgggaca
ctgagccccattgatctatacccccgtcttctcaatttcaatcctgtggtgagccgaagc
tttacaatatccttaactagggattgcatatgcccaatggttctcactcgtggaagtgat
cagcttccagtgagcacaaaatatgatcttagaagtgaccctggtgtagagaaaaattat
ggcaaacttttgctggaaatggcatctgttgttccagatggaatcgtgtgcttttttgtc
agttattcttacatggatggaattgttagtagttggaatgaatctggcattctaaaggaa
attatgaaacataaactggttttcatagagacccatgatgttgttgaaactacacttgcg
ttagacaattatcgtatcgcttgtgattctggaagaggtgccgtctttttctcagtagcc
aggggaaaagtagcagaaggtatagattttgatagacattatggccgacttgttatcatg
tttggcatcccatttcagtatacattgagcagaatattactagcacgattggagtattta
cgggaaactttccagataaaggagggtgattttttgacattcgatgctttgaggcaagct
gcccaatgtgtcggacgagttatcaggtcaaaagcagattatgggatgatgattttcgct
gacaagagatatagtcgtcacgacaagcgctcgaagctgcctagttggatactttcacat
ctacgcgatgcacatctgaacttgagtaccgacatggctgtgcatattgcacgagagttc
ttgaggaagatggctcagccgtacgataagagtggagcgatgggtaaaagaacccttctt
tcacaagaagacttggagaagatggtcaatggagttgaagaaatggtgttttga
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