Salvia hispanica (chia): 125222595
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Entry
125222595 CDS
T09851
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
shis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125222595
03015 mRNA surveillance pathway
125222595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125222595
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125222595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
DUF2457
Motif
Other DBs
NCBI-GeneID:
125222595
NCBI-ProteinID:
XP_047981256
LinkDB
All DBs
Position
4:2076414..2080815
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AA seq
425 aa
AA seq
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MAKPARGRPASPSGSDSRSSSRSRSISRSRSRSRSYSGSGSRSSSRSRSRSRSKSISSSS
SHSRSGSSRSPPPRKSPAEGARRGRSPPPQTKKSSPPPRKASPAPESLVLHVDQLSRNVN
ENHLKEIFGNFGEVVNVRLAMDHVVNLPKGFAYVEFKIRADAEKAQLYMDGAQIDGKVVR
AKFTLPERKKVASPPKAVATTSRRDALKAEDTAVDGDRDGEKRPRDVSPRRKPLSPPRRR
SPGPRRGSPGPRRGSPRREQDSPPPPRRRADSPYRRGDSPPIRRRPPLSPARGRSPSPPR
RFRSPPRSSPRRIRGSPVRRRSPPPPRRRSPRRLRSPPRRSPVGRRRSRSPIRRPARSPS
RSPSPRRGRVPPSRRGRSYSSSPSPPRRGPRRVSRSRSRSRSPRRPIRGRNNSSSSTSSS
PPPKP
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacccgcccgcggccgcccggcgtcgccgtcgggatcagattctcgctcttcc
tcccgctctcgttccatttcccgctcccgctcccgctcgcgttcttactccggctcaggc
tcccgctcctcttccaggtcccgctctcgctcccgctctaaatccatctcctcctcctct
tctcattcgcgtagcggcagctcccgcagccctccgccgcggaaaagtcctgctgaaggg
gcgaggagaggtcgctcacctccaccacaaactaagaaatcgtccccacctccaaggaaa
gcttcacctgctcctgaatctcttgtgctgcatgtggaccagctcagtaggaatgttaat
gaaaaccacttgaaagaaatattcggtaattttggtgaagtggtgaatgtacggctggct
atggatcatgttgttaaccttcccaaaggatttgcatatgttgagttcaagattagggca
gatgctgaaaaggcccagctatatatggatggtgctcaaattgatggtaaagttgttcgg
gcgaagtttacattacctgagagaaagaaggttgcttctcctcccaaagctgttgcaacc
acatcaaggagagatgccttgaaagctgaggacactgctgtggatggtgatagagatggt
gaaaaacgcccaagagatgtttctcctcgtcggaagccactctctccacctcgaaggaga
tctcctggaccaagaagaggatctcctggaccacgaagaggatctcctagacgagagcaa
gattctccaccaccacctcgccgtagagctgattctccttaccgtcgaggtgactcccct
ccaattaggagaaggcctccactatctcctgccagaggccgttcaccttctcctccgaga
cgcttcaggtcaccgccaaggtcatctccaagaagaatacgtggtagtcctgttcgtcgg
cgatctcctcctccacctaggcggcgttcaccaagacgtctccgaagtcctccaagaaga
tctcctgttggtcgcagacgtagtcgctctcctattaggaggcctgctcgttcgccatca
cgatcaccctctcctagaagaggtcgagtgccgccttctagacgtgggaggtcttattct
tcgtcacctagtccacctcgcaggggacctcgtagggtatcacggagccggagccgtagc
cgtagccctcgaaggcctattagagggaggaataacagcagcagcagcaccagcagttct
cctccacctaagccatga
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