KEGG   Salvia hispanica (chia): 125222831
Entry
125222831         CDS       T09851                                 
Name
(RefSeq) histone deacetylase 19-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
shis  Salvia hispanica (chia)
Pathway
shis03082  ATP-dependent chromatin remodeling
shis03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    125222831
   03083 Polycomb repressive complex
    125222831
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:shis03036]
    125222831
Enzymes [BR:shis01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     125222831
Chromosome and associated proteins [BR:shis03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     125222831
   HDAC complexes
    Sin3A-HDAC complex
     125222831
    BRAF-HDAC complex
     125222831
    REST complex
     125222831
    SHIP complex
     125222831
    MiDAC complex
     125222831
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     125222831
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    125222831
  Chromatin remodeling factors
   NuRD complex
    125222831
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 125222831
NCBI-ProteinID: XP_047981618
LinkDB
Position
4:29016908..29021155
AA seq 464 aa
MDTGGNSLPGGADGVKRKVSYFYDPEVGNYYYGQGHPMKPHRMRMTHALLAHYGMLQHMH
VLKPNPARDKDLARFHADDYVNFLRTITPETQQEQLRQLKRFNVGEDCPVFDGLYSFCQT
SAGGSVGGAVKLNHGHCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKVHERVLY
IDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGFGKGKYYSLNVPLDDGI
DDESYQSLFKPIMGKVMEIFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRFMRSFN
VPLLLVGGGGYTIRNVARCWCYETSVALGIELDDKIPQHEYYEYFGPDYTLHVAPSNMEN
KNSRHLLEEIKSKLLENLSRLQHAPSVQFQERPPDSELPQMEEDHDGEDERYDPDSDMEL
DDERKPLPGRVKSELAEPEPKDMDVVKEDEPDREVDLQCSEPLA
NT seq 1395 nt   +upstreamnt  +downstreamnt
atggataccggaggcaattctctaccaggtggagccgatggggtcaagcggaaagtaagc
tatttctatgaccctgaggtagggaattattactacgggcaaggtcacccgatgaagcct
cacaggatgcgcatgacgcacgcgcttcttgcacattatggaatgttgcagcatatgcat
gttctcaagccgaatcccgccagagacaaagatcttgccagatttcacgctgatgattat
gttaattttctgaggaccatcacaccggagacacaacaggaacagctcaggcagctgaag
aggtttaatgttggtgaagactgtcctgtattcgatggtctgtactcgttctgccagact
tctgcaggtggttcggttggtggggccgtgaagctaaatcatggtcattgtgatatagca
gtgaattgggctggtgggttgcatcatgccaagaaatgcgaggcttctggattttgttat
gtgaatgacatcgtgctggctatcttagaactcctaaaagttcatgagcgtgttctctat
atagacattgatattcaccatggtgatggagtcgaggaagcattttacaccacagatagg
gtgatgactgtttcttttcataaatttggagattattttcctgggacaggtgatgtacga
gacattggatttgggaagggaaaatattactctcttaatgttcccttggatgatggaatt
gatgacgaaagctatcagtctctatttaagccaataatgggaaaggttatggagattttt
aaacctggtgcggtagtattacaatgtggtgcagactcgctgtctggagatcggttagga
tgctttaatctctccattaagggtcatgccgagtgtgtgaggtttatgagatcattcaac
gtccctctcctgttggtgggtggtggtggttacaccatacgtaatgttgctcgttgctgg
tgttatgagacaagtgtagcacttggcattgaacttgatgacaagataccacagcatgaa
tactatgagtatttcggtcctgattatactctgcatgttgctccaagtaacatggaaaat
aagaactcgcgtcatttgttggaagagatcaaatcaaagcttcttgaaaacctctcaagg
cttcagcatgcaccaagtgtccaatttcaggagcggccaccagatagtgaactgccacag
atggaagaagatcatgatggagaggatgagagatatgaccccgactctgatatggaactt
gatgatgaacggaagcctctaccaggcagagtgaagagtgaattagctgaacccgaacca
aaagacatggatgttgtcaaagaggatgagccggatcgggaagttgatctgcaatgctcc
gaaccccttgcctaa

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