Salvia hispanica (chia): 125223039
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Entry
125223039 CDS
T09851
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125223039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125223039
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125223039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
APG6_N
COG3_N
Prefoldin_2
V-SNARE
Motif
Other DBs
NCBI-GeneID:
125223039
NCBI-ProteinID:
XP_047981952
LinkDB
All DBs
Position
4:complement(53492965..53497850)
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AA seq
785 aa
AA seq
DB search
MAGTGFSFSSSSAPAFGTSSPAFGAATGASFGFGTATTSSSSTPSFGFASNPSSASSANT
FGFGSGAASSGSSLFGGSSLFGSSSSAAATGSNIFGSASTGAPASGVFGFSSAGTGQTAN
AFGSSTPTPAPSTPTPSTSPFGAQSPFGSPAPGSNLFGSGAPTPSLFGNTSSSASNTGSL
FGSGASATPNPFGSTTATSAPAFGSGLSLNSGLFGSSTSAPSTATAAPQFGVSSATAGIF
GSSTPASTGGNPPSLFGANSGSSPSLFGSSTSFGSSSASASPLGVASSASPVSGFSFPSS
VASTSAFSISSSAASAPGFSFPSASSSASAAPGLSISSSPATSAPAFSFNTASSTTSSGF
SFLKSTASTASSASATTSVSSSPGFSFASAPSLSSSSASTSLFSTVTTTTATSASAPTVS
SASSGLTFPALTVPASGTSASAPTSGFTGFGTTSTLASGTSASATTSGFTGFGTTSTPAS
GTSASAPTSGFTGFGTTSTPASSSGSASSFSLSLKTPATTASQAQSSVALPSFGVTAASS
TTAVSSSTSSATQTSSVLVAAASSGAAPATSTAPASTPKLPSEITGKTVEEIIKEWNGEL
QERTGKFRKQANAIAEWDRRILQNRDILLGLETEVAKVVETQGSLERQLELIETHQDEVD
KALQSMEEEAERLYKEERGMLLDDDAASTRDAMYEQAELIERGLEQMTEQIKTVINSLNA
SQGGELEATDGMNPLDVVVRILNNQLSSLMWIDEKAEEFSSRIQKLASHGSTADRELTGP
KLWLN
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggccggcacaggattctcattctcctcctcctccgcacctgcctttggaacctcatcg
cctgcttttggcgccgccaccggagcctcatttggctttggcaccgcaacgacctcctcc
tcctccacaccttcttttggctttgcctccaaccctagctccgcctcctcggcaaatacg
tttggttttggatcgggagcagcgtcgtctggctcatctctgttcggcggttcctcgctc
ttcggctcatcctcttccgccgcggccactggctccaacatttttggatcagcttctact
ggagctccggcttctggcgttttcggattctcgtctgcaggcacaggccaaacagctaat
gcatttggttcttcgactccaactcccgctccatcaacccccacgccttccacatctccg
tttggcgcccaatctccatttggatcccctgcccccggatccaaccttttcgggtcgggt
gctccaactcccagtctatttggtaatacttcttcttccgcgagcaataccggctctctt
tttgggtcaggggctagtgcaacacctaatccttttggatcaactacggccaccagtgcc
ccggcatttgggtcgggcctgtcactgaactcagggctatttggctcgtcgacatcggct
ccatccactgccactgccgccccacaatttggggtaagttccgcgactgcaggcatattt
ggatcctcaactccagcttctaccggtggcaatcctccgtcgttgtttggggcaaattct
ggatcatctccaagtctttttggttcttccacctcatttggatcatcttcagcttcggct
tcgccattgggtgtggcaagttcagcttcccctgtttctggcttttcattccccagttcg
gttgcttcgacttcagcattctccatttcaagttcagctgcgtcagcacccgggttctca
ttccccagtgcttcatcttcagcctctgccgcgcctggactttcgatttcctcatcacca
gccacgtctgctcctgcattttcatttaatacagcttctagcaccacttcttctggcttt
tcgtttttgaagagtaccgctagcactgcctcctcagcttcggccacaacgtctgtatct
tcttcacctggtttttcatttgcttctgcaccatctctttcgagttcttcagcctcgaca
tctctcttttcaactgtcacaacaactaccgcaaccagtgcatcagctccaactgtgtct
tctgctagttctggtttgacgtttccagcattgacagtgcctgcatcggggacgagtgca
tctgctccaacatcagggtttacaggtttcggcaccactagtacgcttgcatcagggacc
agtgcatctgctacaacttcaggatttactggtttcggcaccactagtacgcctgcatca
gggaccagtgcatctgctccaacttcaggatttactggtttcggcaccactagtacgcct
gcatcatcctcaggaagcgcaagttctttctcactatctttgaaaacaccagcaaccaca
gcctcacaagcacagtcaagcgttgcactgccttcttttggtgttacagctgcgagctca
acaacggcagtgagctcaagtaccagttctgccactcaaacatcatctgttctcgttgca
gctgccagtagcggggctgctccagccactagtacagcaccagcatctacgccaaagtta
ccatctgaaattactgggaaaacagtcgaggagatcattaaagagtggaatggggaactg
caggagcgtactgggaagtttaggaaacaagctaatgctatagctgagtgggatcgcagg
attctacagaatcgtgacattcttcttgggcttgagactgaagttgcaaaggtagttgaa
acacaaggtagtctggagcggcagctggaactaattgaaactcaccaagatgaggttgac
aaagccctgcaaagcatggaggaggaagctgagcgactgtataaagaggagcgtggaatg
cttcttgatgatgatgctgcatctacacgagatgcaatgtatgagcaggctgaactcata
gagcggggattggagcagatgacagaacagatcaaaacagttataaacagtcttaatgcc
agtcaaggtggagagcttgaggcaacagacggaatgaatcccctagatgttgttgtccgc
atattaaacaatcaactgagttcattgatgtggatagatgagaaggccgaggagttctca
tcacgtattcagaagcttgctagccatggctctactgctgatcgtgaactgactggccct
aagctgtggttgaactga
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