KEGG   Salvia hispanica (chia): 125223052
Entry
125223052         CDS       T09851                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
shis  Salvia hispanica (chia)
Pathway
shis03020  RNA polymerase
shis03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    125223052
  09124 Replication and repair
   03420 Nucleotide excision repair
    125223052
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shis03021]
    125223052
   03400 DNA repair and recombination proteins [BR:shis03400]
    125223052
Transcription machinery [BR:shis03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     125223052
DNA repair and recombination proteins [BR:shis03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      125223052
SSDB
Motif
Pfam: RNA_pol_Rpb4 TRF L_PA-C-like DUF5100 DUF7293
Other DBs
NCBI-GeneID: 125223052
NCBI-ProteinID: XP_047981969
LinkDB
Position
4:46329296..46331284
AA seq 138 aa
MSAEEEENAAELKIPDEFLKAKCLMNCEVSLILEHKYEQLQQMADDPMNQMSQVFEKSLQ
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD
DEAIEKMLNDLSLIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtcggccgaagaagaggagaacgccgctgagctcaaaatacccgatgaatttttgaag
gccaaatgtcttatgaattgtgaagtttcccttatacttgaacataaatatgagcagctt
cagcagatggctgatgatccaatgaatcagatgtctcaggtgtttgagaaatcacttcaa
tatgtgaagcgttttagccgatacaagaaccctgatgctgtcagacaagttcgagaaatt
cttagcagatatcagcttgctgagttcgagctctgtgtacttgggaacctttgtcccgaa
acagtggaagaagctatagctatggttccgtccatcaagaccagaggaagagcacatgac
gatgaggcaattgagaagatgctgaacgatctctccttgatcaaaaaatttgagtag

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