Salvia hispanica (chia): 125223119
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Entry
125223119 CDS
T09851
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125223119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125223119
03036 Chromosome and associated proteins [BR:
shis03036
]
125223119
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125223119
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125223119
mRNA degradation factors
5'-3' decay
Decapping complex
125223119
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125223119
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
NA-iREase2
CMS1
Motif
Other DBs
NCBI-GeneID:
125223119
NCBI-ProteinID:
XP_047982064
LinkDB
All DBs
Position
4:32609897..32616035
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AA seq
494 aa
AA seq
DB search
MSSRARYPPPGMGGGRGGGGGMNPNAGPNPSFQPRNPMHQYVQRGPAPNNQNQQMYQNHQ
QQQWLRRNQLPPSDSAVDEVEKTVQSEAIHSSSQDWKASLKLPPRDNRYRTEDVTATKGN
EFEDYFLKRELLMGIYEKGFESPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALE
KIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLQIQVMATTGGTSLKDDIMRLYQPVH
LLVGTPGRILDLANKNVCVLNECSMLVMDEADKLLSPEFQPSIEQLIRFMPTSRQILMFS
ATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQS
IIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG
IDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEI
KQIPPQIDQAVYCQ
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgcgagcgagatacccaccgccaggaatgggcggcggcagaggcggagggggc
ggaatgaacccgaatgccggaccaaaccctagttttcagccacgaaaccctatgcaccag
tatgtgcaaagaggtccagcgcctaataatcagaatcagcaaatgtatcagaatcatcag
cagcagcaatggctgcgaagaaatcagttgcctccatccgattccgctgtagacgaggtt
gaaaagaccgtgcagtcagaagccattcattctagttcacaagattggaaggcaagctta
aagttaccaccacgggacaatcgttacagaaccgaggatgttacagctaccaaaggaaat
gaatttgaagactactttttaaagcgcgaactgctaatgggaatatatgagaagggtttt
gagagcccatccccgattcaggaagagagtattccaattgctctcactggaagtgatatt
ttggctagggcaaaaaatggaaccggaaaaactgcagcgttttgcattcccgccttggag
aagattgatcaagataaaaatgctattcaagttgttattcttgtcccaacaagagaattg
gctcttcaaacttcacaagtttgtaaagaactgggaaagcacttacaaattcaagtcatg
gctactactggtggaactagcttaaaagatgacataatgcgcctttaccagccagtgcat
ttacttgttgggacgcccggaagaattcttgatcttgctaacaagaatgtctgtgttctg
aatgagtgtagcatgcttgtaatggatgaggctgataagcttctgtccccagaattccaa
ccttctatcgagcagttgattcgctttatgcccacaagccgtcagattcttatgttctca
gctacatttcctgttacagtaaaagatttcaaagatcgatacctgagaaaaccctatatc
atcaaccttatggatgagcttaccctaaagggtataacccagttttatgcttttgttgaa
gaaagacagaaagttcactgcctcaacacccttttttcaaagcttcaaataaaccagtct
attattttctgcaattctgtgaatcgggtggaacttcttgccaagaaaatcacagaactt
ggctactcttgcttctacattcacgctaagatgcttcaggatcaccgcaacagagtattt
catgacttccgtaatggtgcctgcaggaatcttgtctgcactgacttgtttacgagaggg
atagatatccaggcagtcaatgttgtaatcaactttgattttcctaagaattctgaaaca
tatttacacagggttggccgatccggaagatttggacaccttggcttagctgtgaatctc
atcacctatgaggaccgttttaatttgtataggattgaacaagaattaggaacagaaatc
aagcagatcccaccacaaattgaccaggctgtatactgtcagtga
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