Salvia hispanica (chia): 125223362
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Entry
125223362 CDS
T09851
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125223362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125223362
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
125223362
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
125223362
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
Mem_trans
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
125223362
NCBI-ProteinID:
XP_047982438
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All DBs
Position
4:57560893..57563405
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AA seq
327 aa
AA seq
DB search
MRGLQLSLDKGQKLRFERAFEVLESLSSKSNSDASVIVADDISVNNEDAILKGHGTAEMN
DRLVATLCGVVERVNKLVYVRPLRARYKPEIGDIIIGRVIEVAPKRWKLEINFSQDAVLM
LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGCLHLQARSQKYGKLKRG
QLLTIPPYLVKKRKQHFHHLDQYGIDLILGCNGFVWVGEHVEVRDDMTEDLSDKSEQQKV
KSWNTMGDEEVQEAYTPPDTRQNICRSANAIRVLSTLGFTITVEIITEIVELSRSMDLDV
HEMLGAEFYVIVAEKEAERRSLPTKRR
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcctgcagttgtcgctcgacaaaggccaaaaactgagattcgaaagagcgttc
gaggtgctggaatctctctcctccaaatccaattccgacgcctctgtcatcgtcgccgac
gatatttccgtcaataatgaagacgccatcctcaagggccatggcacagccgagatgaac
gaccgcttggtggccacgctttgtggagttgtggagcgtgtcaacaagcttgtctacgtc
cggcctctaagggccaggtacaagcccgagattggggatatcatcattggccgtgttatt
gaggttgcaccaaagcggtggaaactggagatcaatttcagccaggatgcagtgctgatg
ctttcatctatgaacttaccagatggcatacagagacgacgaactgcagttgacgaactt
aatatgcgcagcatatttgaagagaatgatgtcatctgtgctgaggttcgtggcttccaa
cacgacggctgcttgcatctacaagcaagaagccagaaatatggaaagctcaagagaggg
caattgcttacaatacccccttatcttgtcaagaagcgaaaacagcattttcaccatcta
gaccaatacggaattgacctgatacttggttgtaatggatttgtttgggttggcgaacat
gttgaagtgcgagatgatatgacagaggatctgtctgacaaatccgagcaacaaaaagtg
aagtcatggaacacaatgggtgatgaagaagttcaagaagcatacactcctccggacacc
aggcaaaatatttgcagatcagccaacgctatccgagtgctgtctactttaggcttcacg
attacagtagaaattatcacagaaattgtggagttgagtaggtctatggatctcgacgtg
catgagatgcttggtgcagaattctatgtcatcgttgctgagaaagaagcagaacgtcga
agcttgccaacaaaaaggagatga
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