Salvia hispanica (chia): 125223383
Help
Entry
125223383 CDS
T09851
Name
(RefSeq) chaperonin CPN60-2, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125223383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125223383
03110 Chaperones and folding catalysts [BR:
shis03110
]
125223383
03029 Mitochondrial biogenesis [BR:
shis03029
]
125223383
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shis04147
]
125223383
Enzymes [BR:
shis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
125223383
Messenger RNA biogenesis [BR:
shis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
125223383
Chaperones and folding catalysts [BR:
shis03110
]
Heat shock proteins
HSP60 / Chaperonin
125223383
Mitochondrial biogenesis [BR:
shis03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
125223383
Exosome [BR:
shis04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
125223383
Exosomal proteins of other body fluids (saliva and urine)
125223383
Exosomal proteins of breast cancer cells
125223383
Exosomal proteins of colorectal cancer cells
125223383
Exosomal proteins of bladder cancer cells
125223383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
125223383
NCBI-ProteinID:
XP_047982468
LinkDB
All DBs
Position
4:complement(40767488..40771396)
Genome browser
AA seq
579 aa
AA seq
DB search
MYRFAANLASKASVVSKSSQQIGGRLGWSRNYAAKDIRFGVEARALMLKGVEELADAVKV
TMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGT
TCATVLTRAIFTEGCKSVAAGMNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGT
ISANGEREIGELIAKAMEKVGKEGVITIQDGKTLFNELEVVEGMKLDRGYISPYFITNQK
TQKCELEDPLILIYEKKISSINAIVKVLELALKRQRPLLIVAEDVESDALATLILNKLRA
GIKVCAIKAPGFGENRKSGLQDLAVLTGGQVITEELGMNLDDVELDILGSCKKVTISKDD
TVILDGSGEKKSIEERCEQIRSAVELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEV
GEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLPTANFDQKIGVQIIQNALKT
PVYTIAANAGVEGAVVVGKLLESENPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAA
SVSSLMTTTEAIVVEQPTEPKAGPPMGGGGMGGMGGMDY
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgttttgcagcaaatctagcctccaaagccagcgttgtgagtaaaagcagccaa
cagattgggggtagattgggatggagcagaaactatgctgccaaagatattagatttgga
gtggaggctagggctttgatgcttaagggtgttgaagagcttgctgatgctgttaaagtc
accatgggtcctaaagggcgtaatgtagtgattgagcagagctggggtgcacccaaagtg
acaaaggatggtgtcactgttgctaagagcattgaatttaaggacaaagttaagaatatt
ggtgcaagccttgttaaacaggtggcaaatgctaccaatgatgttgctggtgatggtaca
acctgtgctactgtccttactcgtgcaatattcaccgaaggctgcaagtcagtggcagct
ggcatgaacgccatggatctaagacgtggcattaccatggctgttgatgctgttgttaca
aacttgaaaagcagagcaaggatgattagcacatcggaggagattgctcaggttggaact
atctctgctaatggagaaagagaaattggtgagctgattgcaaaggccatggaaaaagtt
ggaaaagagggtgtcatcacaattcaagatgggaagacactgttcaatgagttagaagta
gttgagggtatgaagcttgacagaggctatatctccccatacttcatcacaaaccagaag
actcagaaatgtgaattggaggatcctcttattcttatttatgagaagaaaatttctagc
ataaatgctattgttaaagtccttgaattggctttgaagaggcaaaggccacttctgatt
gtcgcggaggatgtggaaagcgatgcactggccactcttatccttaacaagcttcgagct
ggaatcaaagtctgtgcaatcaaagcccctgggttcggtgagaacaggaaatcgggcttg
caggatcttgctgttttaactggaggccaagtcataacggaagagcttggaatgaacttg
gatgatgtggagctggatatacttggatcgtgcaagaaggtaaccatatcaaaggatgat
actgttattcttgatggatctggtgagaagaaatccattgaagaaagatgcgagcagatc
aggtcagcagttgaattgagcacttctgattacgacaaggagaagttgcaagaaaggctt
gccaagctctccggcggtgtagctgtgctaaagattggaggagctagcgaagcagaagtt
ggtgagaagaaagatagagtgactgatgctcttaatgccacaaaagcagctgtagaggaa
gggattgtgcccggtggaggtgttgctctcctctacgcagccaaagaattggagaagctg
ccaacagccaacttcgatcagaagattggtgtccaaattattcaaaatgctttgaagaca
ccggtttacacaattgcagcaaatgccggtgtggagggtgccgttgtggttggcaaattg
ttggaatcagaaaatccagacctcggatatgatgcagctaagggtgaatacgtggatatg
gtaaaggctggtatcatcgacccgttgaaggtcattagaactgcgctcgttgatgctgct
agtgtctcttcattgatgacaacgacagaggcgattgtggtggagcaaccgacagagccg
aaagctggaccaccaatgggcggcgggggcatgggaggaatgggtggcatggactactga
DBGET
integrated database retrieval system
