KEGG   Salvia hispanica (chia): 125223533
Entry
125223533         CDS       T09851                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
shis  Salvia hispanica (chia)
Pathway
shis03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125223533
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:shis03041]
    125223533
Spliceosome [BR:shis03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    125223533
 Complex C
   U5 SnRNP specific factors
    125223533
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_EML NBCH_WD40 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_WDR19_1st eIF2A Beta-prop_HPS5 Beta-prop_RIG_1st Beta-prop_DCAF12 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 125223533
NCBI-ProteinID: XP_047982675
LinkDB
Position
4:complement(22191186..22193320)
AA seq 341 aa
MQVESALSVVGPKPTELSTFTHSFGPPGSGPNGKQRTSSLEAPIMLLAGHQSAVYSMKFN
PAGTVIASGSHDRDIFLWNVHGDCKNFMVLRGHKNAVLDVQWNTDGSQIISTSPDKTLRA
WDVETGKQIKKMVGHLFVVNSCCPARRGPPLIVSGSDDGTAKLWDMRQRGSIQSFPDKYQ
ITAVSFSDASDKIYTGGIDNDVKVWDLRRTDPVMKLQGHHDMITGLQLSPDGSYLLTNSM
DCSLRIWDMRPYAPQNRCVKILEGHQHNFEKNLLRCSWSPDGSKVTAGSSDCMVYVWDTT
SRRILYKLPGHTGSVNECVFHPNEPIIGSCSSDKQIYLGEI
NT seq 1026 nt   +upstreamnt  +downstreamnt
atgcaagtcgaaagtgctctttcggtggttggtccaaagccaacagagttgtcaactttc
acacacagctttggcccacctggttcaggacccaatgggaaacagcggacatcaagctta
gaagcgcctataatgttactggctgggcatcaaagtgcagtctactcaatgaagtttaat
cctgctgggactgtcattgcatctggttcacatgacagggatatctttttgtggaatgtg
cacggtgactgcaaaaattttatggtcttgagagggcacaagaatgctgtcttggatgtt
cagtggaatactgatggttcgcagataatatcaacaagccctgataaaactttaagggca
tgggatgttgagactgggaaacagattaagaagatggtcgggcacttgtttgttgtgaac
tcgtgttgccctgctcggaggggccctcctcttatcgtcagcggatcggatgatggaact
gcaaaactttgggatatgcgtcaaaggggttccattcagagtttcccagacaaataccag
atcacagcagtcagtttttctgatgcatctgataagatttacactggtggcatcgacaat
gatgtcaaggtgtgggatttacgaagaactgatcctgttatgaagcttcaaggacatcat
gatatgatcactggtttgcagctgagtccagatgggtcttaccttctaacaaacagcatg
gattgctcccttcgaatatgggatatgcggccatatgccccccagaatcgctgcgtgaag
attcttgaaggtcatcaacacaattttgagaagaacctgctgaggtgtagctggtcacct
gatggaagcaaagttactgctggtagtagcgactgcatggtctacgtatgggacactact
tcaagacgcatactgtacaagctccctggccatactgggtcagtgaatgaatgcgtcttt
catcccaatgaaccgataatcgggtcttgcagcagcgacaagcagatatatcttggtgaa
atttag

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