Salvia hispanica (chia): 125223554
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Entry
125223554 CDS
T09851
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125223554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125223554
Spliceosome [BR:
shis03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125223554
Complex C
U4/U6.U5 tri-SnRNP related factors
125223554
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Bee_toxin
Motif
Other DBs
NCBI-GeneID:
125223554
NCBI-ProteinID:
XP_047982714
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Position
1:complement(11915230..11919626)
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AA seq
433 aa
AA seq
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MSEIKSSGRPFDQLLEKVLCMNILSSDYFRDLLKLKTYHEVIDEIYVTVTHVEPWMTGNC
RGPSTAFCLLYKFFLMKLTVKQMHGLLTHPDSPYIRAIGFLYLRYVADPKTLWGWCEPYV
KDDEEFSPGCNGRMTTMGAYVRDLLLGQYYFDTLLPRIPVLVLRTIVANLENMKLPSKHC
GVTGETTRGSEETARRPPSVKAALSVSFGQRAPHRTLTRDSSPVRRTVNHSYDRGNESRR
SPHHSGSQNGDLSDRDYPGRERDRGKDGNSDQERTRDRYRDRDDERRRELDKGKDRKYDD
YDRRSRDSYRRSYDRRGREDYRREGSYDRKGREDHRREGSSRHSRSRSRSRSRSQSTHDY
GKHSVSSHNPFSHETKEKRLASSNLAELKDLYGVSSNQKDGVAETSEGRPYRPGGTEEVI
RLGGSSWSRRVAD
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagataaagtcatctgggagaccatttgaccaattattggagaaagtattgtgc
atgaacatactttcttccgattattttcgagacctgttgaaactgaaaacttatcatgaa
gtcattgatgagatttacgtaactgttacacacgtggagccatggatgactggcaactgc
cgagggccttctactgcattctgccttctctataaattcttcctcatgaagctcactgtc
aaacaaatgcacggattattgactcacccagattctccttatattagagcaataggattt
ctctatttaaggtatgtagcagatccaaagactttatggggttggtgtgaaccatacgtt
aaagatgatgaggaattctctcctggttgtaatggccgtatgacgacaatgggtgcatat
gtgagggatttgcttcttggtcagtactacttcgatacacttcttcctcgtattcctgtc
ctggtgttacgcactattgttgccaatcttgaaaatatgaagttgccatctaaacactgt
ggagttactggtgagaccactcgtggaagtgaagagactgcaagaagaccaccttctgtc
aaggctgctctttctgtctctttcggtcaacgtgcccctcatcggacattaactagagat
tcatctccagttcggcgtactgttaatcattcttatgatcgtggtaatgaatcaagacga
tctccccatcattctggaagccaaaatggtgatttatctgatcgggattatcctggaaga
gagagagacaggggcaaggacggcaacagtgatcaagaaagaaccagggatcgctataga
gacagggacgatgaaaggagaagagagctggacaaaggtaaagatagaaagtacgatgat
tatgacagaaggtcccgagactcctatagaaggagttatgataggaggggccgtgaagac
tacaggagagaaggtagttatgataggaagggccgtgaagaccacaggagagaaggtagt
tctcgccatagccgaagcaggagcaggagccggagtcgaagtcagagcacccatgattat
ggtaagcatagtgtaagtagtcacaatccatttagccatgaaactaaggagaagagattg
gcatcgagtaatctggccgagcttaaagatctgtacggtgtatcgagcaatcaaaaggat
ggcgtggctgagacctcagagggtcgcccttacaggcccggtggtactgaggaggtgatc
agactaggtggttcttcatggagccgacgagtggctgactga
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