Salvia hispanica (chia): 125223892
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Entry
125223892 CDS
T09851
Name
(RefSeq) cell division control protein 48 homolog E-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
shis
Salvia hispanica (chia)
Pathway
shis04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125223892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125223892
03009 Ribosome biogenesis [BR:
shis03009
]
125223892
04131 Membrane trafficking [BR:
shis04131
]
125223892
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shis04147
]
125223892
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
125223892
Ribosome biogenesis [BR:
shis03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
125223892
Membrane trafficking [BR:
shis04131
]
SNARE
SNARE associated proteins
Others
125223892
Autophagy
Aggrephagy
Other aggrephagy associated proteins
125223892
Exosome [BR:
shis04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
125223892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_33
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
AAA_28
nSTAND3
Mg_chelatase
AAA_18
Viral_helicase1
Parvo_NS1
ATPase_2
ABC_tran
IstB_IS21
AAA_lid_PRS2_C
AAA_7
NACHT
NB-ARC
AAA_24
TsaE
DUF815
Zeta_toxin
Vps4_C
ResIII
Phage_Mu_Gp48
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
125223892
NCBI-ProteinID:
XP_047983162
LinkDB
All DBs
Position
1:32370718..32375006
Genome browser
AA seq
806 aa
AA seq
DB search
MSNKPESSDPNAKKDFSTAILERKKAANRLVVDEAINDDNSVVSLHPDTMEKLQIFRGDT
ILIKGKKRKDTVCIALAEDTCEQPKIRMNKVVRNNLRVRLGDVVSVHLCPDVKYGKRVHI
LPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVVETDPSEYCVV
APDTEIFCEGEPVKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP
PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAEKNA
PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKARAHVIVMGATNRPNSIDPAL
RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERISKNTHGYVGADLAALCTE
AALQCIREKMDVIDLEDDSIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWE
DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA
NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAA
DRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIF
KSCLRKSPISKDIDLRALAKYTQGFSGADITEICQRAVKYAIRENIEKDIEREKRRGENP
EAMEEDVEDEVAEIKPAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGAEFRFEEQ
SRGVSAGAADPFAAGSVAADDDDLYS
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacaaaccagagtcctccgatcccaacgcgaagaaggattttagcactgcgatt
ttagagaggaaaaaggcggcgaatcggttggtggtggatgaggccatcaacgatgataat
tccgtagtttctcttcaccctgatactatggagaagctccagattttccgcggcgacaca
attttgatcaagggtaagaaacgaaaagatactgtctgcattgcccttgctgaggatacc
tgcgagcaaccaaagattcggatgaataaggttgtccggaacaatctcagagttagactt
ggagatgtcgtttccgtgcacttatgtcctgatgtgaagtatgggaagcgagtccacatt
ctccctgtggatgacaccattgaaggggttactggcaacctttttgatgcttacctaaaa
ccatatttcctagaggcatatcggcctgtgaggaaaggtgatttgtttcttgtgagggga
ggaatgagaagcatagagttcaaggttgttgaaactgatccttcggaatactgtgttgtt
gcccctgatacggaaatcttttgtgagggagagcctgtaaaaagggaggatgaggatagg
ttggatgaagttggttacgatgatgttggcggtgttcgtaaacagatggctcagattcgt
gaattggtagaactgccgctaaggcacccacagcttttcaagtcaattggagtgaagcct
ccgaaaggaattctgctttatggtcctcctggatccgggaaaaccttgattgcccgggct
gtggccaatgagactggtgctttcttcttctgtattaatggaccagaaataatgtcaaaa
atggcaggagaaagtgaaagcaatctcaggaaggcctttgaggaagctgagaagaatgcg
ccttccattatatttattgatgaaattgactccattgcgcccaagagagagaaaacccat
ggagaagtagaaaggaggattgtgtcccaactcctgacattaatggatggactcaaggct
cgcgctcatgttattgtgatgggtgctacgaaccgtcccaacagcatagaccctgctctg
agaaggtttgggaggtttgatagggaaatagacataggcgttcctgatgaagtagggcgc
cttgaggttcttcgtatccacacaaagaacatgaaacttgctgaagatgttgatttggaa
agaatttccaagaatacacatggctacgttggtgccgatttagctgctttgtgcactgag
gctgcccttcaatgcattagggagaagatggatgtgatcgacttggaagatgactccatt
gatgccgagatactgaactccatggctgtcagcaatgagcacttccagactgctcttgga
acgagcaacccctctgctctgcgtgaaacggttgttgaagtgcccaatgttagctgggaa
gacattggagggcttgagaatgtcaagcgggagctacaagagaccgttcaatatccagtt
gagcatcccgagaagtttgagaaatttggaatgtcaccctcgaaaggagttcttttctat
ggtcctcctggatgtggaaaaactttgctagccaaggctatcgcgaacgaatgccaggca
aacttcatcagtgtcaaggggcctgaactgctcactatgtggtttggagagagtgaggcc
aatgtaagagagattttcgacaaggctcgccagtctgctccttgcgtcttattttttgat
gaattggactccattgctactcagagaggaagcagtgtaggagatgctggtggcgctgcg
gatcgtgtgttaaatcaactcctaacagaaatggacggaatgaatgctaagaagactgtc
ttcatcattggtgccaccaacaggcccgacatcatcgatcctgccctcctccgccctggc
cgtcttgatcagctcatctacatccctcttcctgatgaggaatcgcgctaccaaatcttc
aagtcgtgtttgagaaagtcacctatctccaaagacatcgacctaagagcccttgctaag
tacactcaaggattcagcggcgctgatatcaccgagatatgtcagcgtgcagtcaagtat
gccatcagagaaaacatcgaaaaggatatcgagagggagaaacggagaggcgagaacccc
gaggctatggaggaagatgtcgaggacgaggtggcagagatcaaacctgcacacttcgag
gaatcgatgaagtttgctcggaggagtgtgagcgacgctgacatacgcaagtaccaggcg
tttgctcagaccctccagcagtcgaggggattcggagcagaattccgatttgaggagcag
agcaggggggtctctgcgggagctgccgacccttttgcagcaggctctgttgcagctgat
gacgatgatctctacagttaa
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