Salvia hispanica (chia): 125223975
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Entry
125223975 CDS
T09851
Name
(RefSeq) replication factor C subunit 2-like
KO
K10755
replication factor C subunit 2/4
Organism
shis
Salvia hispanica (chia)
Pathway
shis03030
DNA replication
shis03410
Base excision repair
shis03420
Nucleotide excision repair
shis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125223975
03410 Base excision repair
125223975
03420 Nucleotide excision repair
125223975
03430 Mismatch repair
125223975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shis03032
]
125223975
03036 Chromosome and associated proteins [BR:
shis03036
]
125223975
03400 DNA repair and recombination proteins [BR:
shis03400
]
125223975
DNA replication proteins [BR:
shis03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
125223975
DNA Replication Termination Factors
ELG1-RFC complex
125223975
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
125223975
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
125223975
Check point factors
HRAD17(Rad24)-RFC complex
125223975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
AAA_16
AAA_11
AAA_5
Mg_chelatase
AAA_14
AAA_assoc_2
ResIII
AAA_24
AAA_2
SLFN-g3_helicase
nSTAND3
PhoH
AAA_28
AAA_19
AAA_7
AAA_30
DUF3853
DUF815
Parvo_NS1
IstB_IS21
RNA_helicase
AAA_25
NPHP3_N
DNAX_ATPase_lid
ATPase_2
AAA_18
TIP49
bpMoxR
NB-ARC
Motif
Other DBs
NCBI-GeneID:
125223975
NCBI-ProteinID:
XP_047983257
LinkDB
All DBs
Position
4:complement(50908534..50911910)
Genome browser
AA seq
371 aa
AA seq
DB search
MSSPILYAGKLKTLPFSEAKNIHFTLQFAAMAPVLPSSQQWVEKYRPKQVKDVAHQEEVV
RVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLYGPELYKSRVLELNASDDRGINVV
RTKIKNFAAVAVGSARQGVYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI
CNYISRIIEPLASRCAKFRFKPLTEEIMTSRILYICNEEGLNLDSEALSTLSSISQGDLR
RAITYLQGAARLFGSSITSKDLISVSGVIPDDVVQALFTTCRSGDFDMADKEVKNVIAEG
YPASQMLNHLYDVVVESDDIPDDQKARICKKFGEADKCLVDGADEYLQLLDVASNITRAL
NNMPQEFPFGS
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccccaattttatacgcgggaaaattaaaaacccttcctttttctgaagcaaag
aatatccatttcacattgcaatttgcagcaatggcgcctgttttgccgagctcccagcaa
tgggtcgagaaatatcgaccgaagcaagtgaaggatgtagcgcaccaagaagaggtcgtt
cgagttcttaccaacactttggagacaaccaattgtcctcacatgctattttatggccct
cctggcactgggaaaacgactacagctcttgccattgctcatcagctttatggccctgag
ttatacaagtctagagtactggagctgaatgctagtgatgatcgtgggataaatgttgtt
cgaacgaaaataaaaaacttcgctgctgtagctgttggctctgcacgtcaaggtgtttat
ccttgcccaccttataagatcataattcttgatgaggctgactcgatgactgaagatgcc
cagaatgccttgcgacgcaccatggagacatactcaaaagttacaagattcttcttcatt
tgtaactacatcagcagaattatagaaccacttgcatctaggtgcgcgaaattcagattc
aaaccacttacagaagaaattatgacatctcgcattctatacatctgcaacgaagaagga
cttaacttggattcagaggctctttcaaccttaagttctatctctcaaggtgatctgcgc
cgtgctataacatatctacaaggtgctgctcgcttatttggatcctcaattacatctaag
gacttaatcagcgtgtctggtgtcatccctgatgatgttgtgcaggctctctttactact
tgcagaagtggtgatttcgacatggctgataaggaagtgaaaaatgtgattgctgaaggc
tatccagcttctcagatgcttaaccatttgtatgatgtagtcgtcgaatctgatgacata
ccagatgaccagaaagcaagaatatgcaagaaatttggagaggcagataagtgtcttgta
gatggagcagacgagtacttgcaactgttggacgtggctagcaatataacgcgtgcgctc
aataatatgccacaagagttccctttcggaagttag
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integrated database retrieval system
